Ruania alba DSM 21368 is an aerobe, Gram-positive bacterium that was isolated from soil from a salt lake.
Gram-positive aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Ruaniaceae |
| Genus Ruania |
| Species Ruania alba |
| Full scientific name Ruania alba (Tang et al. 2010) Schumann et al. 2021 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 15529 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 19794 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19794 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19794 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19794 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19794 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19794 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 15529 | A11.54 | A4alpha L-Lys-L-Glu |
| 67770 | Observationquinones: MK-8(H4) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | flavin biosynthesis | 93.33 | 14 of 15 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | ||
| 66794 | degradation of sugar acids | 88 | 22 of 25 | ||
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | glycolate and glyoxylate degradation | 83.33 | 5 of 6 | ||
| 66794 | sphingosine metabolism | 83.33 | 5 of 6 | ||
| 66794 | glycolysis | 82.35 | 14 of 17 | ||
| 66794 | degradation of pentoses | 82.14 | 23 of 28 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | metabolism of disaccharids | 81.82 | 9 of 11 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | lipoate biosynthesis | 80 | 4 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | pyrimidine metabolism | 80 | 36 of 45 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | degradation of hexoses | 77.78 | 14 of 18 | ||
| 66794 | leucine metabolism | 76.92 | 10 of 13 | ||
| 66794 | purine metabolism | 76.6 | 72 of 94 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | glutamate and glutamine metabolism | 75 | 21 of 28 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | vitamin B6 metabolism | 72.73 | 8 of 11 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | myo-inositol biosynthesis | 70 | 7 of 10 | ||
| 66794 | sulfoquinovose degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | aspartate and asparagine metabolism | 66.67 | 6 of 9 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | histidine metabolism | 65.52 | 19 of 29 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | non-pathway related | 63.16 | 24 of 38 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | vitamin B1 metabolism | 61.54 | 8 of 13 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | oxidative phosphorylation | 60.44 | 55 of 91 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | phenylacetate degradation (aerobic) | 60 | 3 of 5 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | arginine metabolism | 58.33 | 14 of 24 | ||
| 66794 | methionine metabolism | 57.69 | 15 of 26 | ||
| 66794 | glutathione metabolism | 57.14 | 8 of 14 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | tryptophan metabolism | 55.26 | 21 of 38 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | lysine metabolism | 52.38 | 22 of 42 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | isoprenoid biosynthesis | 46.15 | 12 of 26 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 40 | 2 of 5 | ||
| 66794 | androgen and estrogen metabolism | 37.5 | 6 of 16 | ||
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | 4-hydroxymandelate degradation | 33.33 | 3 of 9 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | ascorbate metabolism | 31.82 | 7 of 22 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | ||
| 66794 | phenol degradation | 30 | 6 of 20 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | biotin biosynthesis | 25 | 1 of 4 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | carotenoid biosynthesis | 22.73 | 5 of 22 | ||
| 66794 | allantoin degradation | 22.22 | 2 of 9 | ||
| 66794 | polyamine pathway | 21.74 | 5 of 23 | ||
| 66794 | vitamin B12 metabolism | 20.59 | 7 of 34 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Aquatic | #Lake (large) | |
| #Environmental | #Terrestrial | #Soil | |
| #Condition | #Saline | - |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 15529 | soil from a salt lake | Xinjiang province, Qijiaojing Lake, 43°26'48''N 91°29'13''E | China | CHN | Asia | 43.4467 | 91.4869 43.4467/91.4869 | |
| 67770 | Soil from a salt lake | Xinjiang Province, north-west China | China | CHN | Asia | |||
| 67771 | From salt lake | Xinjiang Province | China | CHN | Asia |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | IMG-taxon 2634166281 annotated assembly for Ruania alba DSM 21368 | contig | 648782 | 78.15 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 15529 | Haloactinobacterium album strain YIM 93306 16S ribosomal RNA gene, partial sequence | FJ969847 | 1524 | 648782 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 53.50 | no |
| 125439 | motility | BacteriaNetⓘ | no | 89.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 97.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 92.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.64 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 96.42 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 70.47 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.23 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.88 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter. | Schumann P, Kalensee F, Cao J, Criscuolo A, Clermont D, Kohler JM, Meier-Kolthoff JP, Neumann-Schaal M, Tindall BJ, Pukall R. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004769 | 2021 | |
| Phylogeny | Ruania rhizosphaerae sp. nov., a novel actinobacterium isolated from rhizosphere of Suaeda aralocaspica. | Lu WN, Xu YZ, Xie YG, Gao R, Song JQ, Liu DF, Xiao M, Wang HF, Li QL, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005007 | 2021 | |
| Phylogeny | Identification of Haloactinobacterium kanbiaonis sp. nov. and Ruania zhangjianzhongii sp. nov., two novel species of the family Ruaniaceae isolated from faeces of bats (Hipposideros spp.). | Xu M, Dai Y, Huang Y, Yang J, Lai XH, Jin D, Lu S, Zhou J, Zhang S, Bai Y, Jiao Y, Qiao L, Jiang Y, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004953 | 2021 | |
| Phylogeny | Ruania alkalisoli sp. nov., Isolated from Saline-Alkaline Soil. | Sun JQ, Yiayeng PE, Xu L, Huang XX, Li Y | Curr Microbiol | 10.1007/s00284-021-02579-6 | 2021 | |
| Phylogeny | Haloactinobacterium glacieicola sp. nov., isolated from an ice core. | Wang F, Liu Y, Wang N, Xu B, Shen L, Gu Z, Liu K, Liu H, Zhou Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003653 | 2019 | |
| Phylogeny | Haloactinobacterium album gen. nov., sp. nov., a halophilic actinobacterium, and proposal of Ruaniaceae fam. nov. | Tang SK, Zhi XY, Wang Y, Wu JY, Lee JC, Kim CJ, Lou K, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.018440-0 | 2009 | |
| Phylogeny | Ruania suaedae sp. nov. and Ruania halotolerans sp. nov., two actinobacteria isolated from saline soil, and reclassification of Haloactinobacterium kanbiaonis as Occultella kanbiaonis comb. nov. | Xu L, Shang J, Tian J, Sun JQ, Shen B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005443 | 2022 |
| #15529 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21368 |
| #19794 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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