Name: Salinisphaera halophila DSM 24264
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17789

Type strain:

Species: Salinisphaera halophila

Culture col. no.: DSM 24264, CCTCC AB 2011132, JCM 17431, YIM 95161

Strain history: S.-K. Tang YIM 95161.

NCBI tax ID(s): 1051139 (strain), 1304158 (species)

SI-ID 402910

DSM 24264

Section

Salinisphaera halophila DSM 24264 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from brine from a salt well.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Salinisphaeraceae*
	Genus	*Salinisphaera*
	Species	**Salinisphaera halophila**
	Full Scientific Name (LPSN)	Salinisphaera halophila Zhang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30416]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #30416]	Cell length	1.15 µm

[Ref.: #30416]	Cell width	0.5 µm

[Ref.: #30416]	Cell shape	rod-shaped

[Ref.: #30416]	Motility	yes

[Ref.: #17594]

Incubation period

>14 days

[Ref.: #30416]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17594]

Culture medium

TRYPTONE SOYA BROTH (TSB) WITH ADDITIONAL SALTS (DSMZ Medium 1362)

[Ref.: #17594]

Culture medium growth

[Ref.: #17594]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17594]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17594]	growth	28 °C
[Ref.: #30416]	growth	15-40 °C
[Ref.: #30416]	optimum	27.5 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #17594]	Temperature range	mesophilic
[Ref.: #30416]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30416]			optimum	7
[Ref.: #30416]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30416]

Oxygen tolerance

aerobe

[Ref.: #30416]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30416]		NaCl		growth	6-29	%
[Ref.: #30416]		NaCl		optimum	16.50	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30416]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30416]	arabinose ChEBI	+	carbon source
[Ref.: #30416]	asparagine ChEBI	+	carbon source
[Ref.: #30416]	cellobiose ChEBI	+	carbon source
[Ref.: #30416]	fructose ChEBI	+	carbon source
[Ref.: #30416]	galactose ChEBI	+	carbon source
[Ref.: #30416]	glucose ChEBI	+	carbon source
[Ref.: #30416]	glutamate ChEBI	+	carbon source
[Ref.: #30416]	glycerol ChEBI	+	carbon source
[Ref.: #30416]	lactose ChEBI	+	carbon source
[Ref.: #30416]	maltose ChEBI	+	carbon source
[Ref.: #30416]	phenylalanine ChEBI	+	carbon source
[Ref.: #30416]	proline ChEBI	+	carbon source
[Ref.: #30416]	rhamnose ChEBI	+	carbon source
[Ref.: #30416]	sucrose ChEBI	+	carbon source
[Ref.: #30416]	threonine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30416]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17594]	Sample type/isolated from	brine from a salt well
[Ref.: #17594]	Geographic location (country and/or sea, region)	Yunnan province, Shiyang town
[Ref.: #17594]	Country	China
[Ref.: #17594]	Country ISO 3 Code	CHN
[Ref.: #17594]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Brine of a salt well in Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN020587 (>99% sequence identity) for Salinisphaera from Microbeatlas

Aquatic Samples	1677
Soil Samples	14
Animal Samples	163
Plant Samples	8
Total Samples	1862

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17594]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17594]	Salinisphaera halophila strain YIM 95161 16S ribosomal RNA gene, partial sequence	JN020587	1530	ENA	1051139 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinisphaera halophila YIM 95161	GCA_003732545	contig	GenBank	1051139 tax ID	*
[Ref.: #66792]	Salinisphaera halophila YIM 95161	1051139.6	wgs	PATRIC	1051139 tax ID	*

[Ref.: #17594]	GC-content	69.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30416]	GC-content	69.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinisphaera halophila YIM 95161 PATRIC: 1051139.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinisphaera halophila YIM 95161 PATRIC: 1051139.6
[Ref.: #69480]	motile	no	65.421	no
[Ref.: #69480]	flagellated	no	93.87	no
[Ref.: #69480]	gram-positive	no	98.181	yes
[Ref.: #69480]	anaerobic	no	98.196	yes
[Ref.: #69480]	aerobic	yes	86.964	yes
[Ref.: #69480]	halophile	yes	88.422	no
[Ref.: #69480]	spore-forming	no	97.01	yes
[Ref.: #69480]	thermophile	no	98.785	yes
[Ref.: #69480]	glucose-util	yes	78.803	no
[Ref.: #69480]	glucose-ferment	no	88.965	no

Availability in culture collections External links

[Ref.: #17594]

Culture collection no.

DSM 24264, CCTCC AB 2011132, JCM 17431, YIM 95161

[Ref.: #86780]

SI-ID 402910

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salifodinibacter halophilus gen. nov., sp. nov., a halophilic gammaproteobacterium in the family Salinisphaeraceae isolated from a salt mine in the Colombian Andes.	Parada-Pinilla MP, Diaz-Cardenas C, Lopez G, Diaz-Riano JI, Gonzalez LN, Restrepo S, Trujillo ME, Baena S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004490	2020	*
Phylogeny	Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well.	Zhang YJ, Tang SK, Shi R, Klenk HP, Chen C, Yang LL, Zhou Y, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035584-0	2011	*

References

#17594

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24264

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30416

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26752 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86780

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402910.1 )

#26752

IJSEM 2174 2012 ( DOI 10.1099/ijs.0.035584-0 , PubMed 22058321 )

* These data were automatically processed and therefore are not curated

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Salinisphaera halophila YIM 95161

Salinisphaera halophila YIM 95161

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