Salinisphaera dokdonensis (DSM 19549, KCCM 90064, CL-ES53)

Name: Salinisphaera dokdonensis (DSM 19549, KCCM 90064, CL-ES53)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17787

Type strain

Strain Designation CL-ES53

Culture col. no. DSM 19549 KCCM 90064 CL-ES53

NCBI tax ID(s) 454598

Special Collections DSMZ Literature strains

History <- B. C. Cho, Seoul Natl. Univ., Republic of Korea; CL-ES53

Links

Salinisphaera dokdonensis CL-ES53 is an aerobe, Gram-negative, motile bacterium that was isolated from surface seawater.

Gram-negative motile rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406365

DSM 19549

@ref 20215

Last LPSN update 2026-02-09 11:22:18

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Nevskiales

Family Salinisphaeraceae

Genus Salinisphaera

Species Salinisphaera dokdonensis

Full scientific name Salinisphaera dokdonensis Bae et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29276	negative	0.7 µm	0.45 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8167	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8167	positive	growth	28
29276	positive	growth	05-40
29276	positive	optimum	25

Culture pH

@ref	Ability	Type	PH	PH range
29276	positive	optimum	6.75
29276	positive	growth	5.2-8.8	alkaliphile

Physiology and metabolism

Oxygen tolerance

29276

Oxygen toleranceaerobe

Spore formation

29276

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29276	NaCl	positive	growth	04-21 %
29276	NaCl	positive	optimum	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29276	17234 ChEBI	glucose	+	carbon source
29276	17754 ChEBI	glycerol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29276	acid phosphatase	+	3.1.3.2
29276	catalase	+	1.11.1.6
29276	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8167	surface seawater	East Sea, vicinity of Dokdo Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF988634 (>99% sequence identity) for Salinisphaera dokdonensis subclade from Microbeatlas

Aquatic Samples	98
Soil Samples
Animal Samples	36
Plant Samples
Total Samples	134

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8167	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8167	Salinisphaera dokdonensis CL-ES53 16S ribosomal RNA gene, partial sequence	EF988634	1403		1304272

GC content

@ref	GC-content (mol%)	Method
8167	64.9	high performance liquid chromatography (HPLC)
29276	64.9

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinisphaera aquimarina sp. nov., isolated from seawater.	Tang L, Zhang Z, Xie R, Jiao N, Zhang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002638	2018
Phylogeny	Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well.	Zhang YJ, Tang SK, Shi R, Klenk HP, Chen C, Yang LL, Zhou Y, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035584-0	2011
Phylogeny	Salinisphaera orenii sp. nov., isolated from a solar saltern.	Park SJ, Cha IT, Kim SJ, Shin KS, Hong Y, Roh DH, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.028647-0	2011
Phylogeny	Salinisphaera dokdonensis sp. nov., isolated from surface seawater.	Bae GD, Hwang CY, Kim HM, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.010058-0	2009

References

#8167	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19549
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25693	IJSEM 680 2010 ( DOI 10.1099/ijs.0.010058-0 , PubMed 19656943 )
#29276	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25693
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinisphaera dokdonensis (DSM 19549, KCCM 90064, CL-ES53)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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