Name: Dethiosulfovibrio russensis SR12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17773

Type strain:

Species: Dethiosulfovibrio russensis

Strain Designation: SR12

Culture col. no.: DSM 12538, JCM 15825

Strain history: DSM 12538 <-- A. Surkov SR12.

NCBI tax ID(s): 133534 (species)

SI-ID 49314

DSM 12538, JCM 15825

Other strains from Dethiosulfovibrio russensis

D. russensis SR13, DSM 12577

Section

Dethiosulfovibrio russensis SR12 is an anaerobe, mesophilic bacterium that was isolated from Thiodendron bacterial sulfur mat of mineral spring.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Synergistota*
	Class	*Synergistia*
	Order	*Synergistales*
	Family	*Dethiosulfovibrionaceae*
	Genus	*Dethiosulfovibrio*
	Species	**Dethiosulfovibrio russensis**
	Full Scientific Name (LPSN)	Dethiosulfovibrio russensis Surkov et al. 2001

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4759]

Culture medium

DETHIOSULFOVIBRIO MEDIUM (DSMZ Medium 906)

[Ref.: #4759]

Culture medium growth

[Ref.: #4759]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4759]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4759]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #4759]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4759]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4759]	Sample type/isolated from	Thiodendron bacterial sulfur mat of mineral spring
[Ref.: #4759]	Host species	Thiodendron
[Ref.: #4759]	Geographic location (country and/or sea, region)	Staraja Russa health ressort
[Ref.: #4759]	Country	Russia
[Ref.: #4759]	Country ISO 3 Code	RUS
[Ref.: #4759]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	'Thiodendoron' bacterial sulfur mats of mineral springs of the Staraja Russa health resort in Russia
[Ref.: #67770]	Host species	Thiodendoron
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Spring
#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF234542 (>99% sequence identity) for Dethiosulfovibrio from Microbeatlas

Aquatic Samples	971
Soil Samples	86
Animal Samples	275
Plant Samples	42
Total Samples	1374

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4759]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4759]	Dethiosulfovibrio russensis strain sr12 16S ribosomal RNA gene, partial sequence	AF234542	1470	ENA	133534 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dethiosulfovibrio russensis DSM 12538	GCA_021568855	scaffold	GenBank	133534 tax ID	*

[Ref.: #4759]

GC-content

50.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dethiosulfovibrio russensis DSM 12538 NCBI: GCA_021568855.1
[Ref.: #69480]	flagellated	no	84.923	no
[Ref.: #69480]	gram-positive	no	98.712	no
[Ref.: #69480]	anaerobic	yes	99.69	yes
[Ref.: #69480]	aerobic	no	96.939	yes
[Ref.: #69480]	halophile	no	89.63	no
[Ref.: #69480]	spore-forming	no	82.284	no
[Ref.: #69480]	motile	yes	89.979	no
[Ref.: #69480]	glucose-ferment	no	64.712	no
[Ref.: #69480]	thermophile	no	71.559	yes
[Ref.: #69480]	glucose-util	yes	74.074	no

Availability in culture collections External links

[Ref.: #4759]

Culture collection no.

DSM 12538, JCM 15825

[Ref.: #86764]

SI-ID 49314

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sulphur isotope fractionation during the reduction of elemental sulphur and thiosulphate by Dethiosulfovibrio spp.	Surkov AV, Bottcher ME, Kuever J	Isotopes Environ Health Stud	10.1080/10256016.2011.626525	2012	*
Phylogeny	Dethiosulfovibrio russensis sp. nov., Dethosulfovibrio marinus sp. nov. and Dethosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments.	Surkov AV, Dubinina GA, Lysenko AM, Glockner FO, Kuever J	Int J Syst Evol Microbiol	10.1099/00207713-51-2-327	2001	*

References

#4759

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12538

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86764

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49314.1 )

* These data were automatically processed and therefore are not curated

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Dethiosulfovibrio russensis DSM 12538

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