Dethiosulfovibrio peptidovorans DSM 11002 is an anaerobe bacterium that was isolated from offshore oil-producing well.
anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
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| Domain Bacteria |
| Phylum Synergistota |
| Class Synergistia |
| Order Synergistales |
| Family Dethiosulfovibrionaceae |
| Genus Dethiosulfovibrio |
| Species Dethiosulfovibrio peptidovorans |
| Full scientific name Dethiosulfovibrio peptidovorans Magot et al. 1997 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_11002_1.jpg |
| multimedia.multimedia content: | EM_DSM_11002_1.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4156 | DETHIOSULFOVIBRIO PEPTIDOVORANS MEDIUM (DSMZ Medium 786) | Medium recipe at MediaDive | Name: DETHIOSULFOVIBRIO PEPTIDOVORANS MEDIUM (DSMZ Medium 786) Composition: Trypticase peptone 5.0 g/l Na2S2O3 x 5 H2O 5.0 g/l MgCl2 x 6 H2O 3.0 g/l Na2CO3 1.5 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na-acetate 0.5 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l KCl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.054 |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 100 | 4 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 100 | 2 of 2 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | isoleucine metabolism | 100 | 8 of 8 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | d-mannose degradation | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | urea cycle | 84.62 | 11 of 13 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | glycolate and glyoxylate degradation | 83.33 | 5 of 6 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | hydrogen production | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | vitamin B12 metabolism | 79.41 | 27 of 34 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | NAD metabolism | 77.78 | 14 of 18 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | glutamate and glutamine metabolism | 75 | 21 of 28 | ||
| 66794 | heme metabolism | 71.43 | 10 of 14 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | purine metabolism | 70.21 | 66 of 94 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | phenylalanine metabolism | 69.23 | 9 of 13 | ||
| 66794 | alanine metabolism | 68.97 | 20 of 29 | ||
| 66794 | histidine metabolism | 68.97 | 20 of 29 | ||
| 66794 | pyrimidine metabolism | 68.89 | 31 of 45 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | flavin biosynthesis | 66.67 | 10 of 15 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | aspartate and asparagine metabolism | 66.67 | 6 of 9 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | citric acid cycle | 64.29 | 9 of 14 | ||
| 66794 | arginine metabolism | 62.5 | 15 of 24 | ||
| 66794 | gluconeogenesis | 62.5 | 5 of 8 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | methylglyoxal degradation | 60 | 3 of 5 | ||
| 66794 | glutathione metabolism | 57.14 | 8 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 57.14 | 8 of 14 | ||
| 66794 | oxidative phosphorylation | 56.04 | 51 of 91 | ||
| 66794 | CO2 fixation in Crenarchaeota | 55.56 | 5 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 55.56 | 5 of 9 | ||
| 66794 | leucine metabolism | 53.85 | 7 of 13 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | tryptophan metabolism | 50 | 19 of 38 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | non-pathway related | 50 | 19 of 38 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | methionine metabolism | 50 | 13 of 26 | ||
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 50 | 4 of 8 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | cysteine metabolism | 50 | 9 of 18 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | adipate degradation | 50 | 1 of 2 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | lipid metabolism | 48.39 | 15 of 31 | ||
| 66794 | lysine metabolism | 47.62 | 20 of 42 | ||
| 66794 | proline metabolism | 45.45 | 5 of 11 | ||
| 66794 | pentose phosphate pathway | 45.45 | 5 of 11 | ||
| 66794 | metabolism of disaccharids | 45.45 | 5 of 11 | ||
| 66794 | allantoin degradation | 44.44 | 4 of 9 | ||
| 66794 | ubiquinone biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | isoprenoid biosynthesis | 42.31 | 11 of 26 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | ||
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | ||
| 66794 | ketogluconate metabolism | 37.5 | 3 of 8 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | octane oxidation | 33.33 | 1 of 3 | ||
| 66794 | degradation of sugar acids | 32 | 8 of 25 | ||
| 66794 | ascorbate metabolism | 31.82 | 7 of 22 | ||
| 66794 | degradation of sugar alcohols | 31.25 | 5 of 16 | ||
| 66794 | sulfate reduction | 30.77 | 4 of 13 | ||
| 66794 | starch degradation | 30 | 3 of 10 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 30 | 3 of 10 | ||
| 66794 | degradation of pentoses | 28.57 | 8 of 28 | ||
| 66794 | reductive acetyl coenzyme A pathway | 28.57 | 2 of 7 | ||
| 66794 | d-xylose degradation | 27.27 | 3 of 11 | ||
| 66794 | polyamine pathway | 26.09 | 6 of 23 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | phenol degradation | 25 | 5 of 20 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Industrial | #Engineered product | |
| #Engineered | #Industrial | #Oil reservoir |
Global distribution of 16S sequence U52817 (>99% sequence identity) for Dethiosulfovibrio from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM17297v1 assembly for Dethiosulfovibrio peptidovorans DSM 11002 | contig | 469381 | 75.47 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 4156 | Desulfothiovibrio peptidovorans 16S ribosomal RNA, partial sequence | U52817 | 1505 | 469381 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 99.79 | no |
| 125439 | motility | BacteriaNetⓘ | no | 70.77 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 85.32 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.05 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 83.53 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 95.67 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 71.93 | no |
| 125438 | aerobic | aerobicⓘ | no | 97.18 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 83.32 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 65.32 | no |
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| Characterization of different isogenic mutants derived from improved strains of Bacillus naganoensis using Active Hydrogen Bond Network (AHBN) for pullulanase production. | Ndochinwa OG, Wang QY, Amadi OC, Nwagu TN, Nnamchi CI, Moneke AN. | Biochem Biophys Rep | 10.1016/j.bbrep.2025.102322 | 2025 | ||
| The impact of elevated temperature and salinity on microbial communities and food selectivity in heterotrophic nanoflagellates in the Boye River. | Boden L, Bludau D, Sieber G, Deep A, Baikova D, David GM, Hadziomerovic U, Stach TL, Boenigk J. | ISME Commun | 10.1093/ismeco/ycaf049 | 2025 | ||
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| Abundant Sulfitobacter marine bacteria protect Emiliania huxleyi algae from pathogenic bacteria. | Beiralas R, Ozer N, Segev E. | ISME Commun | 10.1038/s43705-023-00311-y | 2023 | ||
| Identification of a Putative CodY Regulon in the Gram-Negative Phylum Synergistetes. | Geng J, Luo S, Shieh HR, Wang HY, Hu S, Chen YM. | Int J Mol Sci | 10.3390/ijms23147911 | 2022 | ||
| Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria. | Blazquez B, Leon DS, Torres-Bacete J, Gomez-Luengo A, Kniewel R, Martinez I, Sordon S, Wilczak A, Salgado S, Huszcza E, Poplonski J, Prieto A, Nogales J. | Nucleic Acids Res | 10.1093/nar/gkad758 | 2023 | ||
| Phylogeny | Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. | Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV. | Genome Biol Evol | 10.1093/gbe/evs109 | 2012 | |
| Phenotype | Predicting phenotypic traits of prokaryotes from protein domain frequencies. | Lingner T, Muhlhausen S, Gabaldon T, Notredame C, Meinicke P. | BMC Bioinformatics | 10.1186/1471-2105-11-481 | 2010 | |
| "A comparison between sugar consumption and ethanol production in wort by immobilized Saccharomyces Cerevisiae, Saccharomyces Ludwigii and Saccharomyces Rouxii on Brewer'S Spent Grain". | Mohammadi A, Razavi SH, Mousavi SM, Rezaei K. | Braz J Microbiol | 10.1590/s1517-838220110002000025 | 2011 | ||
| Comparative Genomic Analysis of Soil Dwelling Bacteria Utilizing a Combinational Codon Usage and Molecular Phylogenetic Approach Accentuating on Key Housekeeping Genes. | Saha J, Saha BK, Pal Sarkar M, Roy V, Mandal P, Pal A. | Front Microbiol | 10.3389/fmicb.2019.02896 | 2019 | ||
| Genetics | Development and implementation of rapid metabolic engineering tools for chemical and fuel production in Geobacillus thermoglucosidasius NCIMB 11955. | Sheng L, Kovacs K, Winzer K, Zhang Y, Minton NP. | Biotechnol Biofuels | 10.1186/s13068-016-0692-x | 2017 | |
| Enzymology | Functional Microbial Communities in Hybrid Linear Flow Channel Reactors for Desulfurization of Tannery Effluent. | Horn EJ, van Hille RP, Oyekola OO, Welz PJ. | Microorganisms | 10.3390/microorganisms10112305 | 2022 | |
| Genetics | Catabolic Machinery of the Human Gut Microbes Bestow Resilience Against Vanillin Antimicrobial Nature. | Yadav M, Pandey R, Chauhan NS. | Front Microbiol | 10.3389/fmicb.2020.588545 | 2020 | |
| Phylogeny | Phylogenetic relationships of three amino-acid-utilizing anaerobes, Selenomonas acidaminovorans, 'Selenomonas acidaminophila' and Eubacterium acidaminophilum, as inferred from partial 16S rDNA nucleotide sequences and proposal of Thermanaerovibrio acidaminovorans gen. nov., comb. nov. and Anaeromusa acidaminophila gen. nov., comb. nov. | Baena S, Fardeau ML, Woo TH, Ollivier B, Labat M, Patel BK. | Int J Syst Bacteriol | 10.1099/00207713-49-3-969 | 1999 | |
| Biotechnology | Biogas production from protein-rich biomass: fed-batch anaerobic fermentation of casein and of pig blood and associated changes in microbial community composition. | Kovacs E, Wirth R, Maroti G, Bagi Z, Rakhely G, Kovacs KL. | PLoS One | 10.1371/journal.pone.0077265 | 2013 | |
| Enzymology | Mechanistic Insight into the Catalytic Promiscuity of Amine Dehydrogenases: Asymmetric Synthesis of Secondary and Primary Amines. | Tseliou V, Masman MF, Bohmer W, Knaus T, Mutti FG. | Chembiochem | 10.1002/cbic.201800626 | 2019 | |
| Phylogeny | Diversity and morphology of members of the phylum "synergistetes" in periodontal health and disease. | Vartoukian SR, Palmer RM, Wade WG. | Appl Environ Microbiol | 10.1128/aem.02763-08 | 2009 | |
| Pepsin homologues in bacteria. | Rawlings ND, Bateman A. | BMC Genomics | 10.1186/1471-2164-10-437 | 2009 | ||
| Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya. | Muturi SM, Muthui LW, Njogu PM, Onguso JM, Wachira FN, Opiyo SO, Pelle R. | PLoS One | 10.1371/journal.pone.0244755 | 2021 | ||
| Metabolism | Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47. | Selesi D, Jehmlich N, von Bergen M, Schmidt F, Rattei T, Tischler P, Lueders T, Meckenstock RU. | J Bacteriol | 10.1128/jb.00874-09 | 2010 | |
| Phylogeny | Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. | Leser TD, Amenuvor JZ, Jensen TK, Lindecrona RH, Boye M, Moller K. | Appl Environ Microbiol | 10.1128/aem.68.2.673-690.2002 | 2002 | |
| Genetics | Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). | Labutti K, Mayilraj S, Clum A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A | Stand Genomic Sci | 10.4056/sigs.1092865 | 2010 | |
| Paenibacillus piscarius sp. nov., a novel nitrogen-fixing species isolated from the gut of the armored catfish Parotocinclus maculicauda. | da Silva MBF, Lemos EA, Vollu RE, Abreu F, Rosado AS, Seldin L. | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01694-5 | 2022 | ||
| Phylogeny | Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba. | Han TY, Tong XM, Wang YW, Wang HM, Chen XR, Kong DL, Guo X, Ruan ZY. | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0521-4 | 2015 | |
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| Phylogeny | Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils. | Khianngam S, Tanasupawat S, Lee JS, Lee KC, Akaracharanya A. | Int J Syst Evol Microbiol | 10.1099/ijs.0.65851-0 | 2009 | |
| Phylogeny | Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil. | Khianngam S, Akaracharanya A, Tanasupawat S, Lee KC, Lee JS. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000406-0 | 2009 | |
| Enzymology | Flavobacterium plurextorum sp. nov. Isolated from Farmed Rainbow Trout (Oncorhynchus mykiss). | Zamora L, Fernandez-Garayzabal JF, Sanchez-Porro C, Palacios MA, Moore ER, Dominguez L, Ventosa A, Vela AI. | PLoS One | 10.1371/journal.pone.0067741 | 2013 | |
| Phylogeny | Dethiosulfovibrio salsuginis sp. nov., an anaerobic, slightly halophilic bacterium isolated from a saline spring. | Diaz-Cardenas C, Lopez G, Patel BKC, Baena S. | Int J Syst Evol Microbiol | 10.1099/ijs.0.010835-0 | 2010 | |
| Aminobacterium colombiensegen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. | Baena S, Fardeau ML, Labat M, Ollivier B, Thomas P, Garcia JL, Patel BK. | Anaerobe | 10.1006/anae.1998.0170 | 1998 | ||
| Phylogeny | Thermanaerovibrio velox sp. nov., a new anaerobic, thermophilic, organotrophic bacterium that reduces elemental sulfur, and emended description of the genus Thermanaerovibrio. | Zavarzina DG, Zhilina TN, Tourova TP, Kuznetsov BB, Kostrikina NA, Bonch-Osmolovskaya EA. | Int J Syst Evol Microbiol | 10.1099/00207713-50-3-1287 | 2000 | |
| Phylogeny | Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity. | Downes J, Vartoukian SR, Dewhirst FE, Izard J, Chen T, Yu WH, Sutcliffe IC, Wade WG. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000364-0 | 2009 | |
| Phylogeny | Dethiosulfovibrio peptidovorans gen. nov., sp. nov., a new anaerobic, slightly halophilic, thiosulfate-reducing bacterium from corroding offshore oil wells. | Magot M, Ravot G, Campaignolle X, Ollivier B, Patel BK, Fardeau ML, Thomas P, Crolet JL, Garcia JL | Int J Syst Bacteriol | 10.1099/00207713-47-3-818 | 1997 |
| #4156 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11002 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66793 | Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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