Aminomonas paucivorans (DSM 12260, ATCC BAA-6, GLU-3)

Multimedia

• @ref:	66793
  multimedia content:	EM_DSM_12260_1.jpg
  multimedia.multimedia content:	EM_DSM_12260_1.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
4660	AMINOMONAS MEDIUM (DSMZ Medium 846)		Medium recipe at MediaDive	Name: AMINOMONAS MEDIUM (DSMZ Medium 846; with strain-specific modifications) Composition: Yeast extract 1.99402 g/l L-Arginine x HCl 1.7348 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l Na2S x 9 H2O 0.498504 g/l KCl 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.299103 g/l K2HPO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

Oxygen tolerance

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	biotin biosynthesis	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	CMP-KDO biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	87.5	7 of 8
66794	palmitate biosynthesis	86.36	19 of 22
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	purine metabolism	82.98	78 of 94
66794	glycolysis	82.35	14 of 17
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	lysine metabolism	78.57	33 of 42
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	chorismate metabolism	77.78	7 of 9
66794	pyrimidine metabolism	75.56	34 of 45
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	NAD metabolism	72.22	13 of 18
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	vitamin B12 metabolism	70.59	24 of 34
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	urea cycle	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	alanine metabolism	68.97	20 of 29
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	cysteine metabolism	66.67	12 of 18
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	heme metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	leucine metabolism	61.54	8 of 13
66794	glycogen metabolism	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	tryptophan metabolism	57.89	22 of 38
66794	methionine metabolism	57.69	15 of 26
66794	citric acid cycle	57.14	8 of 14
66794	metabolism of disaccharids	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	kanosamine biosynthesis II	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	butanoate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	propionate fermentation	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	ethanol fermentation	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	oxidative phosphorylation	49.45	45 of 91
66794	non-pathway related	47.37	18 of 38
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	ketogluconate metabolism	37.5	3 of 8
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	degradation of sugar alcohols	37.5	6 of 16
66794	vitamin B6 metabolism	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	nitrate assimilation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	octane oxidation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	degradation of sugar acids	32	8 of 25
66794	sulfate reduction	30.77	4 of 13
66794	degradation of pentoses	28.57	8 of 28
66794	lipid metabolism	25.81	8 of 31
66794	phenol degradation	25	5 of 20
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation source categories

Isolation

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16579v1 assembly for Aminomonas paucivorans DSM 12260	chromosome	GCA_000165795	584708.3	2502790015	584708	88.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4660	Aminomonas paucivorans 16S ribosomal RNA gene, partial sequence	AF072581	1504		584708

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Carbon and hydrogen isotopic fractionation during abiotic hydrolysis and aerobic biodegradation of phthalate esters.	Zhang D, Wu L, Yao J, Vogt C, Richnow HH.	Sci Total Environ	10.1016/j.scitotenv.2019.01.003	2019
Metabolism	Evaluation of rhamnolipid production capacity of Pseudomonas aeruginosa PAO1 in comparison to the rhamnolipid over-producer strains DSM 7108 and DSM 2874.	Muller MM, Hormann B, Kugel M, Syldatk C, Hausmann R.	Appl Microbiol Biotechnol	10.1007/s00253-010-2901-z	2011
	Identification of a Putative CodY Regulon in the Gram-Negative Phylum Synergistetes.	Geng J, Luo S, Shieh HR, Wang HY, Hu S, Chen YM.	Int J Mol Sci	10.3390/ijms23147911	2022
	Fusaricidins, Polymyxins and Volatiles Produced by Paenibacillus polymyxa Strains DSM 32871 and M1.	Mulner P, Schwarz E, Dietel K, Herfort S, Jahne J, Lasch P, Cernava T, Berg G, Vater J.	Pathogens	10.3390/pathogens10111485	2021
Metabolism	Novel m4C modification in type I restriction-modification systems.	Morgan RD, Luyten YA, Johnson SA, Clough EM, Clark TA, Roberts RJ.	Nucleic Acids Res	10.1093/nar/gkw743	2016
Genetics	Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).	Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Pukall R, Spring S, Rohde M, Sikorski J, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.4056/sigs.1253298	2010
Phylogeny	Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium.	Baena S, Fardeau ML, Ollivier B, Labat M, Thomas P, Garcia JL, Patel BK	Int J Syst Bacteriol	10.1099/00207713-49-3-975	1999