Name: Chitinophaga terrae DSM 18078
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17753

Type strain:

Species: Chitinophaga terrae

Culture col. no.: DSM 18078, Gsoil 238

Strain history: <- S.-T. Lee; GS 238 <- D.-S. An. Deposited as the type strain of "Chitinophaga terrae" An, Im, Lee, Choi and Yoon 2007 (13674). The 16S rRNA gene sequence of this strain (AB267724) shows about 94% sequence similarity to that of the type strain (AB278570) of Chitinophaga terrae Kim and Jung 2007 (11193), DSM 23920. Soil of ginseng field; Korea. Proposed type strain of "Chitinophaga terrae" An, Im, Lee, Choi and Yoon 2007. Taxonomy/description (13674). (Medium 830, 30

NCBI tax ID(s): 1869181 (species)

SI-ID 398723

DSM 18078

Other strains from Chitinophaga terrae

C. terrae KP01, DSM 23920, KCTC 12836, LMG ... (type strain)

Section

Chitinophaga terrae DSM 18078 is a mesophilic bacterium that was isolated from soil of ginseng field.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Chitinophaga*
	Species	"Chitinophaga terrae"
	Full Scientific Name (LPSN)	Chitinophaga terrae An et al. 2007

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7379]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7379]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #7379]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7379]			growth	30 °C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7379]	Sample type/isolated from	soil of ginseng field
[Ref.: #7379]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #7379]	Country	Republic of Korea
[Ref.: #7379]	Country ISO 3 Code	KOR
[Ref.: #7379]	Continent	Asia
[Ref.: #7379]	Geographic location	37.8833°/127.1500°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB267724 (>99% sequence identity) for Chitinophaga from Microbeatlas

Aquatic Samples	31
Soil Samples	661
Animal Samples	75
Plant Samples	277
Total Samples	1044

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7379]	Chitinophaga terrae gene for 16S rRNA, partial sequence, strain: Gsoil 238	AB267724	1468	ENA	398039 tax ID

Availability in culture collections External links

[Ref.: #7379]

Culture collection no.

DSM 18078, Gsoil 238

[Ref.: #86744]

SI-ID 398723

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitinophaga salinisoli sp. nov., isolated from saline soil.	Dong WW, Kong DL, Zhang Q, Zhu J, Wang YW, Song JL, Zhou YQ, Jiang X, Zhang W, Zhao SM, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0947-y	2017	*
Phylogeny	Chitinophaga soli sp. nov. and Chitinophaga terrae sp. nov., isolated from soil of a ginseng field in Pocheon Province, Korea.	An DS, Im WT, Lee ST, Choi WY, Yoon MH	J Microbiol Biotechnol		2007	*

References

#7379

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18078

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86744

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398723.1 )

* These data were automatically processed and therefore are not curated

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