Name: Chitinophaga ginsengisoli M1-22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17746

Type strain:

Species: Chitinophaga ginsengisoli

Strain Designation: M1-22

Culture col. no.: DSM 18107, KCTC 12592, Gsoil 052

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 363837 (species)

SI-ID 290945

LMG 23600, DSM 18107, KCTC 12592

Section

Chitinophaga ginsengisoli M1-22 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from soil of a ginseng field.

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Chitinophaga*
	Species	**Chitinophaga ginsengisoli**
	Full Scientific Name (LPSN)	Chitinophaga ginsengisoli Lee et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7397]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7397]

Culture medium growth

[Ref.: #7397]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7397]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7397]			growth	30 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #7397]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.927

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7397]	Sample type/isolated from	soil of a ginseng field
[Ref.: #7397]	Geographic location (country and/or sea, region)	Pocheon province
[Ref.: #7397]	Country	Republic of Korea
[Ref.: #7397]	Country ISO 3 Code	KOR
[Ref.: #7397]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil, ginseng field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pocheon province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB245374 (>99% sequence identity) for Chitinophaga from Microbeatlas

Aquatic Samples	4
Soil Samples	315
Animal Samples	15
Plant Samples	58
Total Samples	392

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7397]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7397]	Chitinophaga ginsengisoli gene for 16S rRNA, partial sequence	AB245374	1471	ENA	363837 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chitinophaga ginsengisoli DSM 18107	GCA_003014595	scaffold	GenBank	363837 tax ID	*
[Ref.: #66792]	Chitinophaga ginsengisoli strain DSM 18107	363837.3	wgs	PATRIC	363837 tax ID	*
[Ref.: #66792]	Chitinophaga ginsengisoli DSM 18107	2728369473	draft	JGI IMG/M	363837 tax ID	*

[Ref.: #7397]

GC-content

48.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chitinophaga ginsengisoli DSM 18107 NCBI: GCA_003014595.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chitinophaga ginsengisoli DSM 18107 NCBI: GCA_003014595.1
[Ref.: #69480]	flagellated	no	97.042	yes
[Ref.: #69480]	gram-positive	no	97.491	no
[Ref.: #69480]	anaerobic	no	99.081	yes
[Ref.: #69480]	halophile	no	96.252	no
[Ref.: #69480]	spore-forming	no	86.598	no
[Ref.: #69480]	glucose-util	yes	88.587	no
[Ref.: #69480]	aerobic	yes	88.294	no
[Ref.: #69480]	motile	no	93.182	yes
[Ref.: #69480]	glucose-ferment	no	83.133	no
[Ref.: #69480]	thermophile	no	99.369	yes

Availability in culture collections External links

[Ref.: #7397]

Culture collection no.

DSM 18107, KCTC 12592, Gsoil 052

[Ref.: #86737]

SI-ID 290945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chitinophaga agri sp. nov., a bacterium isolated from soil of reclaimed land.	Lee SA, Heo J, Kim TW, Sang MK, Song J, Kwon SW, Weon HY	Arch Microbiol	10.1007/s00203-020-02066-9	2020	*
Phylogeny	Haoranjiania flava gen. nov., sp. nov., a new member of the family Chitinophagaceae, isolated from activated sludge.	Zhang L, Chen XL, Hu Q, Chen K, Yan X, Li SP, Freilich S, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijsem.0.001411	2016	*
Phylogeny	Chitinophaga oryziterrae sp. nov., isolated from the rhizosphere soil of rice (Oryza sativa L.).	Chung EJ, Park TS, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.036442-0	2012	*
Phylogeny	Chitinophaga ginsengisegetis sp. nov. and Chitinophaga ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea.	Lee HG, An DS, Im WT, Liu QM, Na JR, Cho DH, Jin CW, Lee ST, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64688-0	2007	*

References

#7397

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18107

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86737

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290945.1 )

* These data were automatically processed and therefore are not curated

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Chitinophaga ginsengisoli DSM 18107

Chitinophaga ginsengisoli DSM 18107

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