Algoriphagus faecimaris (DSM 23095, JCM 16561, LMG 25474)

Name: Algoriphagus faecimaris (DSM 23095, JCM 16561, LMG 25474)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17713

Type strain

Strain Designation LYX05

Culture col. no. DSM 23095 JCM 16561 LMG 25474 LYX05

NCBI tax ID(s) 686796

Special Collections DSMZ JCM

History DSMZ <- Z. Qi, Ocean Univ. China, Qingdao, P. R. China; LYX05 <- Y. Li JCM <-- Z. Qi LYX05.

Links

Algoriphagus faecimaris LYX05 is a bacterium that was isolated from coastal sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396735

LMG 25474,JCM 16561,DSM 23095

@ref 20215

Last LPSN update 2026-05-29 08:29:04

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus faecimaris

Full scientific name Algoriphagus faecimaris Li et al. 2011

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92
125438	96.822	negative
125439	99.066	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16576	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16576	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.851

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
16576	coastal sediment	Yellow Sea coast, Jiaozhou Bay at Qingdao (36° 09' N 120' 21° E)	China	CHN	Asia	36.15	120.35 36.15/120.35
67770	Coastal sediment at Qingdao	coast of the Yellow Sea	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence GU072591 (>99% sequence identity) for Algoriphagus faecimaris subclade from Microbeatlas

Aquatic Samples	77
Soil Samples	8
Animal Samples	8
Plant Samples	1
Total Samples	94

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16576	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2622736587 annotated assembly for Algoriphagus faecimaris DSM 23095	scaffold	GCA_900101705	686796.3	2622736587	686796	54.3
67770	ASM215058v1 assembly for Algoriphagus faecimaris JCM 16561	contig	GCA_002150585	686796.5	8116676300	686796	51.51

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16576	Algoriphagus faecimaris strain LYX05 16S ribosomal RNA gene, partial sequence	GU072591	1397		686796

GC content

@ref	GC-content (mol%)	Method
16576	42.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2622736587 annotated assembly for Algoriphagus faecimaris DSM 23095
BV-BRC: 686796.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.28	no
125439	motility	BacteriaNetⓘ	no	78.36	no
125439	gram_stain	BacteriaNetⓘ	negative	99.07	no
125439	spore_formation	BacteriaNetⓘ	no	99.85	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus faecimaris strain DSM 23095
PATRIC: 686796.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.82	no
125438	anaerobic	anaerobicⓘ	no	92.67	no
125438	spore-forming	spore-formingⓘ	no	86.94	no
125438	aerobic	aerobicⓘ	yes	82.54	no
125438	thermophilic	thermophileⓘ	no	95.67	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus faecimaris sp. nov., isolated from coastal sediment.	Li Y, Yan S, Yang Q, Qi Z, Zhang XH, Fu YB	Int J Syst Evol Microbiol	10.1099/ijs.0.027862-0	2011

References

#16576	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23095
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Algoriphagus faecimaris (DSM 23095, JCM 16561, LMG 25474)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900101705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media