Name: Algoriphagus aquaeductus T4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17711

Type strain:

Species: Algoriphagus aquaeductus

Strain Designation: T4

Culture col. no.: DSM 19759, LMG 24398, NCIMB 14399

Strain history: <- J. E. Rau, Zentrum für Umweltforschung und nachhaltige Technologien, Universität Bremen, Bremen; T4 <- B Lübben, Zentrum für Umweltforschung und nachhaltige Technologien, Universität Bremen, Bremen

NCBI tax ID(s): 475299 (species)

SI-ID 323187

LMG 24398, DSM 19759, NCIMB 14399

Section

Algoriphagus aquaeductus T4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater pipe.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus aquaeductus**
	Full Scientific Name (LPSN)	Algoriphagus aquaeductus Rau et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30209]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #30209]	Cell length	1.5-15 µm

[Ref.: #30209]	Cell width	0.5-2.5 µm

[Ref.: #30209]	Cell shape	rod-shaped

[Ref.: #30209]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.033

[Ref.: #30209]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8299]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8299]

Culture medium growth

[Ref.: #8299]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8299]

Culture medium composition

expand / minimize

[Ref.: #8299]

Culture medium

ALGORIPHAGUS AQUAEDUCTUS MEDIUM (DSMZ Medium 1332)

[Ref.: #8299]

Culture medium growth

[Ref.: #8299]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8299]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8299]			growth	28 °C
[Ref.: #30209]			optimum	25-30 °C

[Ref.: #8299]	Temperature range	mesophilic
[Ref.: #30209]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30209]			optimum	8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30209]

Oxygen tolerance

aerobe

[Ref.: #30209]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.984

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30209]		NaCl		growth	<4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30209]	asparagine ChEBI	+	carbon source
[Ref.: #30209]	cellobiose ChEBI	+	carbon source
[Ref.: #30209]	dextrin ChEBI	+	carbon source
[Ref.: #30209]	fructose ChEBI	+	carbon source
[Ref.: #30209]	galactose ChEBI	+	carbon source
[Ref.: #30209]	glucose ChEBI	+	carbon source
[Ref.: #30209]	glycerol ChEBI	+	carbon source
[Ref.: #30209]	glycogen ChEBI	+	carbon source
[Ref.: #30209]	lactose ChEBI	+	carbon source
[Ref.: #30209]	maltose ChEBI	+	carbon source
[Ref.: #30209]	mannose ChEBI	+	carbon source
[Ref.: #30209]	myo-inositol ChEBI	+	carbon source
[Ref.: #30209]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30209]	succinate ChEBI	+	carbon source
[Ref.: #30209]	sucrose ChEBI	+	carbon source
[Ref.: #30209]	trehalose ChEBI	+	carbon source
[Ref.: #30209]	tween 20 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30209]	catalase	+	1.11.1.6
[Ref.: #30209]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30209]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8299]	Sample type/isolated from	freshwater pipe
[Ref.: #8299]	Geographic location (country and/or sea, region)	Tenerife island
[Ref.: #8299]	Country	Spain
[Ref.: #8299]	Country ISO 3 Code	ESP
[Ref.: #8299]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU161637 (>99% sequence identity) for Algoriphagus aquaeductus from Microbeatlas

Aquatic Samples	503
Soil Samples	69
Animal Samples	146
Plant Samples	17
Total Samples	735

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8299]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8299]	Algoriphagus aquaeductus strain T4 16S ribosomal RNA gene, partial sequence	EU161637	1398	ENA	475299 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus aquaeductus T4	GCA_003253485	scaffold	GenBank	475299 tax ID	*
[Ref.: #66792]	Algoriphagus aquaeductus DSM 19759	2728369468	draft	JGI IMG/M	475299 tax ID	*

[Ref.: #8299]	GC-content	41.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30209]	GC-content	41.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus aquaeductus T4 NCBI: GCA_003253485.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus aquaeductus T4 NCBI: GCA_003253485.1
[Ref.: #69480]	flagellated	no	95.928	yes
[Ref.: #69480]	gram-positive	no	98.064	no
[Ref.: #69480]	anaerobic	no	98.701	no
[Ref.: #69480]	halophile	no	86.442	no
[Ref.: #69480]	spore-forming	no	94.178	no
[Ref.: #69480]	aerobic	yes	84.837	yes
[Ref.: #69480]	thermophile	no	97.95	yes
[Ref.: #69480]	glucose-util	yes	88.246	yes
[Ref.: #69480]	motile	no	91.042	yes
[Ref.: #69480]	glucose-ferment	no	89.457	no

Availability in culture collections External links

[Ref.: #8299]

Culture collection no.

DSM 19759, LMG 24398, NCIMB 14399

[Ref.: #86702]

SI-ID 323187

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus shivajiensis sp. nov., isolated from Cochin back water, India.	Kumar PA, Bhumika V, Ritika C, Bhaskar YV, Priyashanth P, Aravind R, Bindu E, Srinivas TN	Syst Appl Microbiol	10.1016/j.syapm.2012.11.006	2013	*
Phylogeny	Algoriphagus aquaeductus sp. nov., isolated from a freshwater pipe.	Rau JE, Blotevogel KH, Fischer U	Int J Syst Evol Microbiol	10.1099/ijs.0.030809-0	2011	*

References

#8299

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19759

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30209

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26554 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86702

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323187.1 )

#26554

IJSEM 675 2012 ( DOI 10.1099/ijs.0.030809-0 , PubMed 21551331 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Algoriphagus aquaeductus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF