Name: Algoriphagus vanfongensis DSM 17529
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17710

Type strain:

Species: Algoriphagus vanfongensis

Culture col. no.: DSM 17529, KCTC 12716, KMM 6241

Strain history: <- OI Nedashkovskaya, KMM, Russia

NCBI tax ID(s): 1120968 (strain), 426371 (species)

SI-ID 309524

DSM 17529, KCTC 12716, LMG 23353

Section

Algoriphagus vanfongensis DSM 17529 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from coral Palithoa sp..

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus vanfongensis**
	Full Scientific Name (LPSN)	Algoriphagus vanfongensis Nedashkovskaya et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32173]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #32173]	Cell length	1.75 µm

[Ref.: #32173]	Cell width	0.45 µm

[Ref.: #32173]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32173]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.216

[Ref.: #32173]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7044]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7044]

Culture medium growth

[Ref.: #7044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7044]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7044]	growth	28 °C
[Ref.: #32173]	growth	12-35 °C
[Ref.: #32173]	optimum	23.5 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #7044]	Temperature range	mesophilic
[Ref.: #32173]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32173]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32173]		NaCl		growth	0-8	%
[Ref.: #32173]		NaCl		optimum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32173]	arabinose ChEBI	+	carbon source
[Ref.: #32173]	cellobiose ChEBI	+	carbon source
[Ref.: #32173]	esculin ChEBI	+	hydrolysis
[Ref.: #32173]	glucose ChEBI	+	carbon source
[Ref.: #32173]	lactose ChEBI	+	carbon source
[Ref.: #32173]	maltose ChEBI	+	carbon source
[Ref.: #32173]	mannose ChEBI	+	carbon source
[Ref.: #32173]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32173]	rhamnose ChEBI	+	carbon source
[Ref.: #32173]	sucrose ChEBI	+	carbon source
[Ref.: #32173]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32173]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32173]	catalase	+	1.11.1.6
[Ref.: #32173]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32173]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7044]	Sample type/isolated from	coral Palithoa sp.
[Ref.: #7044]	Host species	Palithoa
[Ref.: #7044]	Geographic location (country and/or sea, region)	South China Sea, Vanfong Bay
[Ref.: #7044]	Country	Vietnam
[Ref.: #7044]	Country ISO 3 Code	VNM
[Ref.: #7044]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From coral `Palithoa` sp.
[Ref.: #67771]	Geographic location (country and/or sea, region)	Vanfong Bay, South China Sea
[Ref.: #67771]	Country	Vietnam
[Ref.: #67771]	Country ISO 3 Code	VNM
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7044]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7044]	Algoriphagus vanfongensis strain KMM 6241 16S ribosomal RNA gene, partial sequence	EF392675	1375	ENA	426371 tax ID
[Ref.: #7044]	Algoriphagus vanfongensis strain DSM 17529 Type 16S ribosomal RNA gene, partial sequence	MK660196	1496	ENA	426371 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Algoriphagus vanfongensis DSM 17529	GCA_000429465	scaffold	GenBank	1120968 tax ID
[Ref.: #66792]	Algoriphagus vanfongensis DSM 17529	1120968.3	wgs	PATRIC	1120968 tax ID	*
[Ref.: #66792]	Algoriphagus vanfongensis DSM 17529	2523231017	draft	JGI IMG/M	1120968 tax ID	*

[Ref.: #7044]

GC-content

43.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus vanfongensis DSM 17529 DSM 17529 NCBI: GCA_000429465.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus vanfongensis DSM 17529 PATRIC: 1120968.3
[Ref.: #69480]	motile	no	92.353	yes
[Ref.: #69480]	flagellated	no	97.471	yes
[Ref.: #69480]	gram-positive	no	97.956	yes
[Ref.: #69480]	anaerobic	no	98.887	no
[Ref.: #69480]	aerobic	yes	91.304	yes
[Ref.: #69480]	halophile	no	70.571	no
[Ref.: #69480]	spore-forming	no	95.291	no
[Ref.: #69480]	glucose-util	yes	90.11	yes
[Ref.: #69480]	thermophile	no	98.83	yes
[Ref.: #69480]	glucose-ferment	no	90.967	no

Availability in culture collections External links

[Ref.: #7044]

Culture collection no.

DSM 17529, KCTC 12716, KMM 6241

[Ref.: #86701]

SI-ID 309524

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus algorifonticola sp. nov., a marine bacterium isolated from cold spring area of South China Sea.	Yan C, Chen C, Chai B, Ye Y, Anwar N, Zhao Z, Wang R, Huo Y, Zhang X, Wu M, Zheng D	Int J Syst Evol Microbiol	10.1099/ijsem.0.005365	2022	*
Phylogeny	Algoriphagus zhangzhouensis sp. nov., isolated from mangrove sediment.	Yang C, Li Y, Guo Q, Lai Q, Zheng T, Tian Y	Int J Syst Evol Microbiol	10.1099/ijs.0.044271-0	2012	*
Phylogeny	Proposal of Algoriphagus vanfongensis sp. nov., transfer of members of the genera Hongiella Yi and Chun 2004 emend. Nedashkovskaya et al. 2004 and Chimaereicella Tiago et al. 2006 to the genus Algoriphagus, and emended description of the genus Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya et al. 2004.	Nedashkovskaya OI, Kim SB, Kwon KK, Shin DS, Luo X, Kim SJ, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.65073-0	2007	*

References

#7044

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17529

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32173

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28415 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86701

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309524.1 )

#28415

IJSEM 1988 2007 ( DOI 10.1099/ijs.0.65073-0 , PubMed 17766860 )

* These data were automatically processed and therefore are not curated

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Algoriphagus vanfongensis DSM 17529 DSM 17529

Algoriphagus vanfongensis DSM 17529

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