Algoriphagus alkaliphilus (DSM 22703, CIP 108470, LMG 22694)

Name: Algoriphagus alkaliphilus (DSM 22703, CIP 108470, LMG 22694)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17709

Type strain

Strain Designation AC-74, AC74

Culture col. no. DSM 22703 CIP 108470 LMG 22694 AC-74 AC74

NCBI tax ID(s) 279824

Special Collections DSMZ CIP

History <- CIP <- I. Tiago, Univ. Coimbra, Portugal; AC-74 2004, I. Tiago, Coimbra Univ., Coimbra, Portugal: strain AC74 CIP <- 2004, I. Tiago, Coimbra Univ., Coimbra, Portugal: strain AC74

Links

Algoriphagus alkaliphilus AC-74 is a Gram-negative, rod-shaped bacterium that was isolated from non-saline, highly alkaline groundwater sample.

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132900

LMG 22694,CIP 108470,DSM 22703

@ref 20215

Last LPSN update 2026-02-09 11:22:17

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus alkaliphilus

Full scientific name Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007

Synonyms (1)

Chimaereicella alkaliphila

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		99.8
125438	negative		95.489
116244	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16473	ALGORIPHAGUS ALKALIPHILUS MEDIUM (DSMZ Medium 1242)	Medium recipe at MediaDive	Name: ALGORIPHAGUS ALKALIPHILUS MEDIUM (DSMZ Medium 1242) Composition: Agar 15.0 g/l Tris buffer 12.114 g/l Yeast extract 1.0 g/l Proteose peptone no. 3 1.0 g/l Casamino acids 1.0 g/l Glucose 1.0 g/l K2HPO4 0.6 g/l NaNO3 0.3445 g/l Na2HPO4 0.0555 g/l KNO3 0.0515 g/l Pyruvic acid 0.05 g/l MgSO4 x 7 H2O 0.05 g/l Nitrilotriacetic acid 0.05 g/l NaCl 0.04 g/l CaSO4 x 2 H2O 0.03 g/l MnSO4 x H2O 0.0011 g/l H3BO3 0.00025 g/l ZnSO4 x 7 H2O 0.00025 g/l CoCl2 x 6 H2O 2.3e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l Distilled water
37965	MEDIUM 592 - for No name sp.		Distilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.100 g);Agar (15.000 g);Glucose (1.000 g);Yeast extract (1.000 g);Pyruvic acid (0.050g);Casamino acids (1.000 g);Proteose Peptone N°3 (1.000 g);Di Potassium monohydrogenophosphate
116244	CIP Medium 592	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16473	positive	growth	28
37965	positive	growth	30
116244	positive	growth	25-30
116244	negative	growth	5
116244	negative	growth	10
116244	negative	growth	37
116244	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.9

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Halophily

@ref	Salt	Tested relation	Concentration
116244	NaCl	growth	0 %
116244	NaCl	growth	2 %
116244	NaCl	growth	4 %
116244	NaCl	growth	6 %
116244	NaCl	growth	8 %
116244	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116244	16947 ChEBI	citrate	-	carbon source
116244	4853 ChEBI	esculin	+	hydrolysis
116244	606565 ChEBI	hippurate	+	hydrolysis
116244	17632 ChEBI	nitrate	+	reduction
116244	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116244	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116244	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116244	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
116244	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
116244	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116244	caseinase	-	3.4.21.50
116244	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
116244	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116244	gelatinase	-
116244	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116244	lipase	-
68382	lipase (C 14)	-		from API zym
116244	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116244	ornithine decarboxylase	-	4.1.1.17
116244	oxidase	+
116244	protease	-
68382	trypsin	+	3.4.21.4	from API zym
116244	tryptophan deaminase	-
116244	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116244	-	+	+	+	-	+	+	+	+	+	+	+	-	+	-	+	+	+	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116244	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Groundwater
#Condition	#Alkaline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
16473	non-saline, highly alkaline groundwater sample	borehole at Cabeço de Vide	Portugal	PRT	Europe
116244	Environment, Alkaline ground water	Cabeco de Vide	Portugal	PRT	Europe	2000

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16473	1	Risk group (German classification) According to TRBA 466
116244	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2595698204 annotated assembly for Algoriphagus alkaliphilus DSM 22703	scaffold	GCA_900103735	279824.5	2595698204	279824	59.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16473	Chimaereicella alkaliphila 16S rRNA gene, type strain AC74	AJ717393	1489		279824

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algoriphagus alkaliphilus DSM 22703
NCBI: GCA_900103735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	no	76.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus alkaliphilus DSM 22703
NCBI: GCA_900103735.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.49	no
125438	anaerobic	anaerobicⓘ	no	94.94	no
125438	aerobic	aerobicⓘ	yes	80.88	no
125438	spore-forming	spore-formingⓘ	no	84.50	no
125438	thermophilic	thermophileⓘ	no	96.42	yes
125438	flagellated	motile2+ⓘ	no	88.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus litoralis sp. nov., isolated from the junction between the ocean and a freshwater lake.	Wei Y, Mao H, Wang K, Yao H, Zhang Y, Cao J, Xie Z, Fang J	Antonie Van Leeuwenhoek	10.1007/s10482-019-01280-w	2019
Phylogeny	Algoriphagus trabzonensis sp. nov., isolated from freshwater, and emended description of Algoriphagus alkaliphilus.	Inan K, Kacagan M, Ozer A, Osman Belduz A, Canakci S	Int J Syst Evol Microbiol	10.1099/ijs.0.000246	2015
Phylogeny	Algoriphagus jejuensis sp. nov., isolated from seawater.	Lee DH, Kahng HY, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.030106-0	2011
Phylogeny	Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil.	Ahmed I, Yokota A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.64728-0	2007
Phylogeny	Chimaereicella alkaliphila gen. nov., sp. nov., a Gram-negative alkaliphilic bacterium isolated from a nonsaline alkaline groundwater.	Tiago I, Mendes V, Pires C, Morais PV, Verissimo A	Syst Appl Microbiol	10.1016/j.syapm.2005.07.005	2005

References

#16473	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22703
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37965	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#116244	Collection of Institut Pasteur ; Curators of the CIP; CIP 108470
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Algoriphagus alkaliphilus (DSM 22703, CIP 108470, LMG 22694)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900103735

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media