Name: Algoriphagus alkaliphilus AC-74
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17709

Type strain:

Species: Algoriphagus alkaliphilus

Strain Designation: AC-74, AC74

Culture col. no.: DSM 22703, CIP 108470, LMG 22694

Strain history: CIP <- 2004, I. Tiago, Coimbra Univ., Coimbra, Portugal: strain AC74

NCBI tax ID(s): 279824 (species)

SI-ID 132900

LMG 22694, CIP 108470, DSM 22703

Special Collections

DSMZ
CIP

Section

Algoriphagus alkaliphilus AC-74 is a Gram-negative, rod-shaped bacterium that was isolated from non-saline, highly alkaline groundwater sample.

Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus alkaliphilus**
	Full Scientific Name (LPSN)	Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007

Synonym

Chimaereicella alkaliphila

Information on morphological and physiological properties Morphology

[Ref.: #116244]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.489

[Ref.: #116244]	Cell shape	rod-shaped

[Ref.: #116244]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16473]

Culture medium

ALGORIPHAGUS ALKALIPHILUS MEDIUM (DSMZ Medium 1242)

[Ref.: #16473]

Culture medium growth

[Ref.: #16473]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16473]

Culture medium composition

expand / minimize

[Ref.: #37965]

Culture medium

MEDIUM 592 - for No name sp.

[Ref.: #37965]

Culture medium growth

[Ref.: #37965]

Culture medium composition

expand / minimize

[Ref.: #116244]

Culture medium

CIP Medium 592

[Ref.: #116244]

Culture medium growth

[Ref.: #116244]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #16473]		growth	28 °C
[Ref.: #37965]		growth	30 °C
[Ref.: #116244]		growth	25-30 °C
[Ref.: #116244]	no	growth	5 °C
[Ref.: #116244]	no	growth	10 °C
[Ref.: #116244]	no	growth	37 °C
[Ref.: #116244]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #116244]	NaCl	no	growth	0	%
[Ref.: #116244]	NaCl	no	growth	2	%
[Ref.: #116244]	NaCl	no	growth	4	%
[Ref.: #116244]	NaCl	no	growth	6	%
[Ref.: #116244]	NaCl	no	growth	8	%
[Ref.: #116244]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116244]	citrate ChEBI	-	carbon source
[Ref.: #116244]	esculin ChEBI	+	hydrolysis
[Ref.: #116244]	hippurate ChEBI	+	hydrolysis
[Ref.: #116244]	nitrate ChEBI	+	reduction
[Ref.: #116244]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116244]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116244]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116244]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #116244]	amylase	+
[Ref.: #116244]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116244]	caseinase	-	3.4.21.50
[Ref.: #116244]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #116244]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116244]	gelatinase	-
[Ref.: #116244]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116244]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116244]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116244]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116244]	oxidase	+
[Ref.: #116244]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116244]	tryptophan deaminase	-
[Ref.: #116244]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116244]	2761	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116244]	11208	-	+	+	+	-	+	+	+	+	+	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16473]	Sample type/isolated from	non-saline, highly alkaline groundwater sample
[Ref.: #16473]	Geographic location (country and/or sea, region)	borehole at Cabeço de Vide
[Ref.: #16473]	Country	Portugal
[Ref.: #16473]	Country ISO 3 Code	PRT
[Ref.: #16473]	Continent	Europe

[Ref.: #116244]	Sample type/isolated from	Environment, Alkaline ground water
[Ref.: #116244]	Geographic location (country and/or sea, region)	Cabeco de Vide
[Ref.: #116244]	Country	Portugal
[Ref.: #116244]	Country ISO 3 Code	PRT
[Ref.: #116244]	Continent	Europe
[Ref.: #116244]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Groundwater
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16473]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116244]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16473]	Chimaereicella alkaliphila 16S rRNA gene, type strain AC74	AJ717393	1489	GenBank ENA	279824 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus alkaliphilus DSM 22703	GCA_900103735	scaffold	GenBank ENA	279824 tax ID	*
[Ref.: #66792]	Algoriphagus alkaliphilus strain DSM 22703	279824.5	wgs	PATRIC	279824 tax ID	*
[Ref.: #66792]	Algoriphagus alkaliphilus DSM 22703	2595698204	draft	JGI IMG/M	279824 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus alkaliphilus DSM 22703 NCBI: GCA_900103735.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus alkaliphilus DSM 22703 NCBI: GCA_900103735.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.489	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.943	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.875	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.5	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.418	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.006	no

Availability in culture collections External links

[Ref.: #16473]

Culture collection no.

DSM 22703, CIP 108470, LMG 22694

[Ref.: #86700]

SI-ID 132900

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus litoralis sp. nov., isolated from the junction between the ocean and a freshwater lake.	Wei Y, Mao H, Wang K, Yao H, Zhang Y, Cao J, Xie Z, Fang J	Antonie Van Leeuwenhoek	10.1007/s10482-019-01280-w	2019	*
Phylogeny	Algoriphagus trabzonensis sp. nov., isolated from freshwater, and emended description of Algoriphagus alkaliphilus.	Inan K, Kacagan M, Ozer A, Osman Belduz A, Canakci S	Int J Syst Evol Microbiol	10.1099/ijs.0.000246	2015	*
Phylogeny	Algoriphagus jejuensis sp. nov., isolated from seawater.	Lee DH, Kahng HY, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.030106-0	2011	*
Phylogeny	Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil.	Ahmed I, Yokota A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.64728-0	2007	*
Phylogeny	Chimaereicella alkaliphila gen. nov., sp. nov., a Gram-negative alkaliphilic bacterium isolated from a nonsaline alkaline groundwater.	Tiago I, Mendes V, Pires C, Morais PV, Verissimo A	Syst Appl Microbiol	10.1016/j.syapm.2005.07.005	2005	*

References

#16473

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22703

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37965 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86700

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132900.1 )

#116244 Collection of Institut Pasteur ; Curators of the CIP; CIP 108470
* These data were automatically processed and therefore are not curated

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Algoriphagus alkaliphilus DSM 22703

Algoriphagus alkaliphilus DSM 22703

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