Name: Algoriphagus terrigena DS-44
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17708

Type strain:

Species: Algoriphagus terrigena

Strain Designation: DS-44

Culture col. no.: DSM 22685, CIP 108837, KCTC 12545

Strain history: CIP <- 2005, J. H. Yoon, KRIBB, Taejon, South Korea: strain DS-44

NCBI tax ID(s): 1120967 (strain), 344884 (species)

SI-ID 290955

CIP 108837, KCTC 12545, DSM 22685

Special Collections

Section

When using BacDive for research please cite our paper

Algoriphagus terrigena DS-44 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus terrigena**
	Full Scientific Name (LPSN)	Algoriphagus terrigena Yoon et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31708]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #123474]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.5
[Ref.: #125439]	Gram stain	negative Confidence in %99.8

[Ref.: #31708]	Cell length	0.8-2.5 µm

[Ref.: #31708]	Cell width	0.4-0.6 µm

[Ref.: #31708]	Cell shape	rod-shaped
[Ref.: #123474]	Cell shape	oval-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31708]	Motility	no
[Ref.: #123474]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %90

[Ref.: #31708]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16462]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16462]

Culture medium growth

[Ref.: #16462]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16462]

Culture medium composition

expand / minimize

[Ref.: #38333]

Culture medium

Marine agar (MA)

[Ref.: #38333]

Culture medium growth

[Ref.: #38333]

Culture medium composition

expand / minimize

[Ref.: #123474]

Culture medium

CIP Medium 13

[Ref.: #123474]

Culture medium growth

[Ref.: #123474]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16462]	growth	25 °C
[Ref.: #31708]	growth	10-36 °C
[Ref.: #31708]	optimum	25 °C
[Ref.: #38333]	growth	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #31708]			optimum	6.5-7.5
[Ref.: #31708]			growth	5.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31708]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31708]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.6

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31708]		NaCl		growth	02-06	%
[Ref.: #31708]		NaCl		optimum	2	%

[Ref.: #31708]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31708]	cellobiose ChEBI	+	carbon source
[Ref.: #31708]	esculin ChEBI	+	hydrolysis
[Ref.: #31708]	fructose ChEBI	+	carbon source
[Ref.: #31708]	galactose ChEBI	+	carbon source
[Ref.: #31708]	maltose ChEBI	+	carbon source
[Ref.: #123474]	nitrate ChEBI	+	reduction
[Ref.: #123474]	nitrite ChEBI	-	reduction
[Ref.: #31708]	salicin ChEBI	+	carbon source
[Ref.: #31708]	sucrose ChEBI	+	carbon source
[Ref.: #31708]	trehalose ChEBI	+	carbon source
[Ref.: #31708]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123474]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123474]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123474]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123474]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123474]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123474]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123474]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123474]	11498	-	+	-	+	-	+	-	-	+	+	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16462]	Sample type/isolated from	soil
[Ref.: #16462]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #16462]	Country	Republic of Korea
[Ref.: #16462]	Country ISO 3 Code	KOR
[Ref.: #16462]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #123474]	Sample type/isolated from	Environment, Soil
[Ref.: #123474]	Geographic location (country and/or sea, region)	Dokdo Island
[Ref.: #123474]	Country	Republic of Korea
[Ref.: #123474]	Country ISO 3 Code	KOR
[Ref.: #123474]	Continent	Asia
[Ref.: #123474]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ178979 (>99% sequence identity) for Algoriphagus terrigena from Microbeatlas

Aquatic Samples	329
Soil Samples	108
Animal Samples	281
Plant Samples	14
Total Samples	732

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16462]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123474]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16462]	Algoriphagus terrigena strain DS-44 16S ribosomal RNA gene, partial sequence	DQ178979	1479	GenBank ENA	344884 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus terrigena DSM 22685	GCA_000429445	scaffold	GenBank ENA	1120967 tax ID	*
[Ref.: #66792]	Algoriphagus terrigena DSM 22685	1120967.3	wgs	PATRIC	1120967 tax ID	*
[Ref.: #66792]	Algoriphagus terrigena DSM 22685	2523231064	draft	JGI IMG/M	1120967 tax ID	*

[Ref.: #16462]	GC-content	49.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31708]	GC-content	49 mol%
[Ref.: #16462]	GC-content	47.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus terrigena DSM 22685 DSM 22685 NCBI: GCA_000429445.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.985	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	82.825	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	81.483	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.95	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algoriphagus terrigena DSM 22685 NCBI: GCA_000429445
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	69.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	54.1
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.6

Availability in culture collections External links

[Ref.: #16462]

Culture collection no.

DSM 22685, CIP 108837, KCTC 12545

[Ref.: #86699]

SI-ID 290955

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus jejuensis sp. nov., isolated from seawater.	Lee DH, Kahng HY, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.030106-0	2011	*
Phylogeny	Algoriphagus terrigena sp. nov., isolated from soil.	Yoon JH, Lee MH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64092-0	2006	*

References

#16462

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22685

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31708

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27985 (see below)

#38333 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86699

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290955.1 )

#123474 Collection of Institut Pasteur ; Curators of the CIP; CIP 108837

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27985

IJSEM 777 2006 ( DOI 10.1099/ijs.0.64092-0 , PubMed 16585693 )

* These data were automatically processed and therefore are not curated

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Algoriphagus terrigena DSM 22685 DSM 22685

Algoriphagus terrigena DSM 22685

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