Name: Algoriphagus locisalis MSS-170
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17707

Type strain:

Species: Algoriphagus locisalis

Strain Designation: MSS-170

Culture col. no.: DSM 23445, KCTC 12310, JCM 12597, CIP 108874

Strain history: <- Jung-Hoon Yoon, KRIBB

NCBI tax ID(s): 305507 (species)

SI-ID 232815

KCTC 12310, JCM 12597, CIP 108874, DSM 23445

Special Collections

Section

Algoriphagus locisalis MSS-170 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus locisalis**
	Full Scientific Name (LPSN)	Algoriphagus locisalis Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31457]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.989

[Ref.: #31457]	Cell length	2.25 µm

[Ref.: #31457]	Cell width	0.55 µm

[Ref.: #31457]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31457]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.5

[Ref.: #31457]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17213]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17213]

Culture medium growth

[Ref.: #17213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17213]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17213]	growth	28 °C
[Ref.: #31457]	growth	04-35 °C
[Ref.: #31457]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31457]			optimum	7.5
[Ref.: #31457]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31457]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31457]		NaCl		growth	0-9	%
[Ref.: #31457]		NaCl		optimum	2	%

[Ref.: #31457]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31457]	arabinose ChEBI	+	carbon source
[Ref.: #31457]	cellobiose ChEBI	+	carbon source
[Ref.: #31457]	esculin ChEBI	+	hydrolysis
[Ref.: #31457]	fructose ChEBI	+	carbon source
[Ref.: #31457]	galactose ChEBI	+	carbon source
[Ref.: #31457]	glucose ChEBI	+	carbon source
[Ref.: #31457]	lactose ChEBI	+	carbon source
[Ref.: #31457]	maltose ChEBI	+	carbon source
[Ref.: #31457]	mannose ChEBI	+	carbon source
[Ref.: #31457]	melibiose ChEBI	+	carbon source
[Ref.: #31457]	raffinose ChEBI	+	carbon source
[Ref.: #31457]	rhamnose ChEBI	+	carbon source
[Ref.: #31457]	salicin ChEBI	+	carbon source
[Ref.: #31457]	sucrose ChEBI	+	carbon source
[Ref.: #31457]	trehalose ChEBI	+	carbon source
[Ref.: #31457]	tween 20 ChEBI	+	carbon source
[Ref.: #31457]	tween 40 ChEBI	+	carbon source
[Ref.: #31457]	tween 60 ChEBI	+	carbon source
[Ref.: #31457]	tween 80 ChEBI	+	carbon source
[Ref.: #31457]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31457]		catalase	+	1.11.1.6
[Ref.: #31457]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31457]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater of a marine solar saltern of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sea water, marine solar saltern
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17213]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31457]	Algoriphagus locisalis strain MSS-170 16S ribosomal RNA gene, partial sequence	AY835922	1477	GenBank ENA	305507 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algoriphagus locisalis DSM 23445	GCA_900116615	scaffold	GenBank ENA	305507 tax ID
[Ref.: #66792]	Algoriphagus locisalis strain DSM 23445	305507.7	wgs	PATRIC	305507 tax ID	*
[Ref.: #66792]	Algoriphagus locisalis DSM 23445	2639762564	draft	JGI IMG/M	305507 tax ID	*

[Ref.: #31457]	GC-content	42 mol%
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	42.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus locisalis DSM 23445 NCBI: GCA_900116615.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus locisalis strain DSM 23445 PATRIC: 305507.7
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.989	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.121	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.441	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.992	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.523	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	yes

Availability in culture collections External links

[Ref.: #17213]

Culture collection no.

DSM 23445, KCTC 12310, JCM 12597, CIP 108874

[Ref.: #86698]

SI-ID 232815

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus locisalis sp. nov., isolated from a marine solar saltern.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63605-0	2005	*

References

#17213

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23445

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31457

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27759 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86698

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232815.1 )

#27759

IJSEM 1635 2005 ( DOI 10.1099/ijs.0.63605-0 , PubMed 16014494 )

* These data were automatically processed and therefore are not curated

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Algoriphagus locisalis DSM 23445

Algoriphagus locisalis strain DSM 23445

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