Name: Algoriphagus yeomjeoni MSS-160
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17706

Type strain:

Species: Algoriphagus yeomjeoni

Strain Designation: MSS-160

Culture col. no.: DSM 23446, CIP 108748, JCM 12598, KCTC 12309

Strain history: CIP <- 2005, JCM <- J. H. Yoon, KRIBB: strain MSS-160

NCBI tax ID(s): 291403 (species)

SI-ID 137990

JCM 12598, KCTC 12309, CIP 108748, DSM 23446

Section

Algoriphagus yeomjeoni MSS-160 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine solar saltern.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus yeomjeoni**
	Full Scientific Name (LPSN)	Algoriphagus yeomjeoni Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31404]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #124015]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #31404]	Cell length	2 µm

[Ref.: #31404]	Cell width	0.55 µm

[Ref.: #31404]	Cell shape	rod-shaped
[Ref.: #124015]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31404]	Motility	no
[Ref.: #124015]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.915

[Ref.: #31404]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17214]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17214]

Culture medium growth

[Ref.: #17214]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17214]

Culture medium composition

expand / minimize

[Ref.: #40057]

Culture medium

Marine agar (MA)

[Ref.: #40057]

Culture medium growth

[Ref.: #40057]

Culture medium composition

expand / minimize

[Ref.: #124015]

Culture medium

CIP Medium 13

[Ref.: #124015]

Culture medium growth

[Ref.: #124015]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #17214]		growth	28 °C
[Ref.: #31404]		growth	25-30 °C
[Ref.: #31404]		optimum	27.5 °C
[Ref.: #40057]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #67771]		growth	25-30 °C
[Ref.: #124015]		growth	30 °C
[Ref.: #124015]	no	growth	37 °C
[Ref.: #124015]	no	growth	41 °C

[Ref.: #17214]	Temperature range	mesophilic
[Ref.: #31404]	Temperature range	mesophilic
[Ref.: #40057]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #124015]	Temperature range	mesophilic
[Ref.: #124015]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31404]			optimum	7.5
[Ref.: #31404]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31404]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31404]		NaCl		growth	<9	%
[Ref.: #31404]		NaCl		optimum	4.5	%

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31404]	cellobiose ChEBI	+	carbon source
[Ref.: #31404]	esculin ChEBI	+	hydrolysis
[Ref.: #31404]	fructose ChEBI	+	carbon source
[Ref.: #31404]	galactose ChEBI	+	carbon source
[Ref.: #31404]	gelatin ChEBI	+	carbon source
[Ref.: #31404]	glucose ChEBI	+	carbon source
[Ref.: #31404]	lactose ChEBI	+	carbon source
[Ref.: #31404]	maltose ChEBI	+	carbon source
[Ref.: #31404]	melibiose ChEBI	+	carbon source
[Ref.: #124015]	nitrate ChEBI	-	reduction
[Ref.: #124015]	nitrite ChEBI	-	reduction
[Ref.: #31404]	raffinose ChEBI	+	carbon source
[Ref.: #31404]	rhamnose ChEBI	+	carbon source
[Ref.: #31404]	salicin ChEBI	+	carbon source
[Ref.: #31404]	sucrose ChEBI	+	carbon source
[Ref.: #31404]	trehalose ChEBI	+	carbon source
[Ref.: #31404]	tween 20 ChEBI	+	carbon source
[Ref.: #31404]	tween 40 ChEBI	+	carbon source
[Ref.: #31404]	tween 60 ChEBI	+	carbon source
[Ref.: #31404]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #124015]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #124015]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #31404]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #124015]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #124015]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #124015]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #124015]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #124015]	11431	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17214]	Sample type/isolated from	marine solar saltern
[Ref.: #17214]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #17214]	Country	Republic of Korea
[Ref.: #17214]	Country ISO 3 Code	KOR
[Ref.: #17214]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Marine solar saltern in the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From marine solar saltern in the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #124015]	Sample type/isolated from	Marine solar saltern
[Ref.: #124015]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #124015]	Country	Republic of Korea
[Ref.: #124015]	Country ISO 3 Code	KOR
[Ref.: #124015]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY699794 (>99% sequence identity) for Algoriphagus from Microbeatlas

Aquatic Samples	307
Soil Samples	18
Animal Samples	38
Plant Samples	5
Total Samples	368

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17214]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #124015]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17214]	Algoriphagus yeomjeoni strain MSS-160 16S ribosomal RNA gene, partial sequence	AY699794	1476	ENA	291403 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus yeomjeoni DSM 23446	GCA_003259505	scaffold	GenBank	291403 tax ID	*
[Ref.: #66792]	Algoriphagus yeomjeoni strain DSM 23446	291403.6	wgs	PATRIC	291403 tax ID	*
[Ref.: #66792]	Algoriphagus yeomjeoni DSM 23446	2593339292	draft	JGI IMG/M	291403 tax ID	*

[Ref.: #31404]	GC-content	41 mol%
[Ref.: #67770]	GC-content	41 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	41.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus yeomjeoni DSM 23446 NCBI: GCA_003259505.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus yeomjeoni DSM 23446 NCBI: GCA_003259505.1
[Ref.: #69480]	motile	no	90.609	yes
[Ref.: #69480]	flagellated	no	97.284	yes
[Ref.: #69480]	gram-positive	no	97.796	yes
[Ref.: #69480]	anaerobic	no	98.645	yes
[Ref.: #69480]	aerobic	yes	87.906	no
[Ref.: #69480]	halophile	no	64.022	yes
[Ref.: #69480]	spore-forming	no	95.087	no
[Ref.: #69480]	glucose-util	yes	90.061	yes
[Ref.: #69480]	thermophile	no	98.833	no
[Ref.: #69480]	glucose-ferment	no	89.443	no

Availability in culture collections External links

[Ref.: #17214]

Culture collection no.

DSM 23446, CIP 108748, JCM 12598, KCTC 12309

[Ref.: #86697]

SI-ID 137990

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Penaeicolahalotolerans gen. nov., sp. nov., a novel bacterium of the family Cyclobacteriaceae isolated from a shrimp pond.	Ali S, Xie J, Chen Y, Cai R, Juventus AJ, Hu Z, Zhang Y, Wang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.005047	2021	*
Phylogeny	Algoriphagus yeomjeoni sp. nov., isolated from a marine solar saltern in the Yellow Sea, Korea.	Yoon JH, Kang SJ, Jung SY, Lee CH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63479-0	2005	*

References

#17214

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23446

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31404

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27713 (see below)

#40057 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID137990.1 )

#124015 Collection of Institut Pasteur ; Curators of the CIP; CIP 108748

#27713

IJSEM 865 2005 ( DOI 10.1099/ijs.0.63479-0 , PubMed 15774676 )

* These data were automatically processed and therefore are not curated

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Algoriphagus yeomjeoni DSM 23446

Algoriphagus yeomjeoni DSM 23446

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