Name: Algoriphagus ornithinivorans JC2052
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17699

Type strain:

Species: Algoriphagus ornithinivorans

Strain Designation: JC2052

Culture col. no.: DSM 15282, IMSNU 14014, KCTC 12052, CIP 108303

Strain history: CIP <- 2004, J. Chun, Seoul, Korea: strain JC2052

NCBI tax ID(s): 226506 (species)

SI-ID 97544

DSM 15282, LMG 22068, KCTC 12052, CIP 108303

Other strains from Algoriphagus ornithinivorans

A. ornithinivorans JC2053, DSM 15281, KCTC 12053

Section

Algoriphagus ornithinivorans JC2052 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment sample of getbol.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus ornithinivorans**
	Full Scientific Name (LPSN)	Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovskaya et al. 2007

Synonym

Hongiella ornithinivorans

Information on morphological and physiological properties Morphology

[Ref.: #30033]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #121448]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #30033]	Cell length	0.8-2.6 µm

[Ref.: #30033]	Cell width	0.3-0.4 µm

[Ref.: #30033]	Cell shape	rod-shaped
[Ref.: #121448]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30033]	Motility	no
[Ref.: #121448]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.004

[Ref.: #121448]

Hemolysis ability

[Ref.: #30033]	Pigment production	yes
[Ref.: #121448]	Pigment production	no
[Ref.: #121448]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5791]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5791]

Culture medium growth

[Ref.: #5791]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5791]

Culture medium composition

expand / minimize

[Ref.: #33938]

Culture medium

Marine agar (MA)

[Ref.: #33938]

Culture medium growth

[Ref.: #33938]

Culture medium composition

expand / minimize

[Ref.: #121448]

Culture medium

CIP Medium 13

[Ref.: #121448]

Culture medium growth

[Ref.: #121448]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5791]		growth	37 °C
[Ref.: #30033]		growth	35-40 °C
[Ref.: #30033]		optimum	37.5 °C
[Ref.: #33938]		growth	37 °C
[Ref.: #67771]		growth	35-40 °C
[Ref.: #121448]		growth	15-45 °C
[Ref.: #121448]	no	growth	5 °C

[Ref.: #5791]	Temperature range	mesophilic
[Ref.: #30033]	Temperature range	mesophilic
[Ref.: #33938]	Temperature range	mesophilic
[Ref.: #121448]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30033]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30033]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #121448]	Oxygen tolerance	obligate aerobe

[Ref.: #30033]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.959

	Salt	Tested relation		Salt conc.
[Ref.: #30033]	NaCl		optimum	1	%
[Ref.: #121448]	NaCl	no	growth	0	%
[Ref.: #121448]	NaCl	no	growth	2	%
[Ref.: #121448]	NaCl	no	growth	4	%
[Ref.: #121448]	NaCl	no	growth	6	%
[Ref.: #121448]	NaCl	no	growth	8	%
[Ref.: #121448]	NaCl	no	growth	10	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121448]	esculin ChEBI	+	hydrolysis
[Ref.: #30033]	fructose ChEBI	+	carbon source
[Ref.: #30033]	galactose ChEBI	+	carbon source
[Ref.: #121448]	hippurate ChEBI	-	hydrolysis
[Ref.: #121448]	malonate ChEBI	-	assimilation
[Ref.: #121448]	nitrate ChEBI	-	reduction
[Ref.: #121448]	nitrate ChEBI	-	respiration
[Ref.: #121448]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121448]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121448]		acetoin ChEBI	-
[Ref.: #121448]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121448]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121448]	amylase	+
[Ref.: #121448]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121448]	caseinase	-	3.4.21.50
[Ref.: #30033]	catalase	+	1.11.1.6
[Ref.: #121448]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #30033]	cytochrome oxidase	+	1.9.3.1
[Ref.: #121448]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121448]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #30033]	gelatinase	+
[Ref.: #121448]	gelatinase	+
[Ref.: #121448]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121448]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121448]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121448]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121448]	oxidase	+
[Ref.: #121448]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121448]	tryptophan deaminase	-
[Ref.: #121448]	tween esterase	-
[Ref.: #121448]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121448]	11069	-	+	+	+	-	+	+	+	+	+	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5791]	Sample type/isolated from	sediment sample of getbol
[Ref.: #5791]	Geographic location (country and/or sea, region)	Korea, Ganghwa island
[Ref.: #5791]	Country	Republic of Korea
[Ref.: #5791]	Country ISO 3 Code	KOR
[Ref.: #5791]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ganghwa Island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.5922°/126.4570°

[Ref.: #121448]	Sample type/isolated from	Environment, Sample of tidal flat sediment from Ganghwa Island
[Ref.: #121448]	Geographic location (country and/or sea, region)	Ganghwa Island
[Ref.: #121448]	Country	Republic of Korea
[Ref.: #121448]	Country ISO 3 Code	KOR
[Ref.: #121448]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY264840 (>99% sequence identity) for Algoriphagus ornithinivorans from Microbeatlas

Aquatic Samples	937
Soil Samples	37
Animal Samples	59
Plant Samples	1
Total Samples	1034

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5791]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121448]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5791]	Algoriphagus ornithinivorans strain JC2052 16S ribosomal RNA gene, partial sequence	AY264840	1442	ENA	226506 tax ID
[Ref.: #20218]	Flexibacteraceae bacterium K439 16S ribosomal RNA gene, partial sequence	AY367763	713	ENA	254320 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus ornithinivorans DSM 15282	GCA_900115305	scaffold	GenBank	226506 tax ID	*
[Ref.: #66792]	Algoriphagus ornithinivorans strain DSM 15282	226506.7	wgs	PATRIC	226506 tax ID	*
[Ref.: #66792]	Algoriphagus ornithinivorans DSM 15282	2622736437	draft	JGI IMG/M	226506 tax ID	*

[Ref.: #30033]	GC-content	38 mol%
[Ref.: #67771]	GC-content	38.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus ornithinivorans DSM 15282 NCBI: GCA_900115305.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus ornithinivorans DSM 15282 NCBI: GCA_900115305.1
[Ref.: #69480]	motile	no	92.536	yes
[Ref.: #69480]	flagellated	no	97.221	yes
[Ref.: #69480]	gram-positive	no	97.787	no
[Ref.: #69480]	anaerobic	no	98.212	yes
[Ref.: #69480]	aerobic	yes	86.085	yes
[Ref.: #69480]	halophile	no	82.508	yes
[Ref.: #69480]	spore-forming	no	94.991	yes
[Ref.: #69480]	glucose-ferment	no	88.797	no
[Ref.: #69480]	thermophile	no	97.037	yes
[Ref.: #69480]	glucose-util	yes	88.231	no

Availability in culture collections External links

[Ref.: #5791]

Culture collection no.

DSM 15282, IMSNU 14014, KCTC 12052, CIP 108303

[Ref.: #86690]

SI-ID 97544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus algorifonticola sp. nov., a marine bacterium isolated from cold spring area of South China Sea.	Yan C, Chen C, Chai B, Ye Y, Anwar N, Zhao Z, Wang R, Huo Y, Zhang X, Wu M, Zheng D	Int J Syst Evol Microbiol	10.1099/ijsem.0.005365	2022	*
Phylogeny	Algoriphagus kandeliae sp. nov., isolated from mangrove rhizosphere soil.	Song ZM, Wang KL, Yin Q, Chen CC, Xu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003954	2020	*
Phylogeny	Algoriphagus aquimaris sp. nov., isolated from seashore sand.	Kim J, Yoon SH, Yang KH, Kim S, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003793	2020	*
Phylogeny	Algoriphagus zhangzhouensis sp. nov., isolated from mangrove sediment.	Yang C, Li Y, Guo Q, Lai Q, Zheng T, Tian Y	Int J Syst Evol Microbiol	10.1099/ijs.0.044271-0	2012	*
Phylogeny	Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment.	Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.02861-0	2004	*

References

#5791

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15282

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30033

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26396 (see below)

#33938 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86690

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97544.1 )

#121448 Collection of Institut Pasteur ; Curators of the CIP; CIP 108303

#26396

IJSEM 157 2004 ( DOI 10.1099/ijs.0.02861-0 , PubMed 14742474 )

* These data were automatically processed and therefore are not curated

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Algoriphagus ornithinivorans DSM 15282

Algoriphagus ornithinivorans DSM 15282

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