Algoriphagus halophilus (DSM 15292, IMSNU 14013, KCTC 12051)

Name: Algoriphagus halophilus (DSM 15292, IMSNU 14013, KCTC 12051)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17698

Type strain

Strain Designation JC2051

Culture col. no. DSM 15292 IMSNU 14013 KCTC 12051 JC2051 CIP 108304

NCBI tax ID(s) 226505

Special Collections DSMZ KCTC Literature strains CIP

Links

Algoriphagus halophilus JC2051 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from sediment sample of getbol.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 97543

DSM 15292,LMG 22067,KCTC 12051,CIP 108304

@ref 20215

Last LPSN update 2025-12-16 09:51:09

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus halophilus

Full scientific name Algoriphagus halophilus (Yi and Chun 2004) Nedashkovskaya et al. 2004

Synonyms (1)

Hongiella halophila

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30033	negative	1-1.8 µm	0.3-0.5 µm	rod-shaped
67771				rod-shaped
67771	negative
125438					91
125438	negative				96.489
125439	negative				97.1
119812	negative			rod-shaped

Colony morphology

Pigmentation

@ref	Production	Name
30033
119812		Flexirubin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5830	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36717	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119812	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5830	positive	growth	35	mesophilic
30033	positive	optimum	35	mesophilic
36717	positive	growth	37	mesophilic
67771	positive	growth	35	mesophilic
119812	positive	growth	15-37
119812	negative	growth	5
119812	negative	growth	41
119812	negative	growth	45

Culture pH

@ref	Ability	Type	PH
30033	positive	optimum	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30033	aerobe
67771	aerobe
125439	obligate aerobe	90.7

Spore formation

@ref	Spore formation	Confidence
30033
125439		90.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30033	NaCl	positive	optimum	5 %
119812	NaCl		growth	0 %
119812	NaCl		growth	2 %
119812	NaCl		growth	4 %
119812	NaCl		growth	6 %
119812	NaCl		growth	8 %
119812	NaCl		growth	10 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119812	4853 ChEBI	esculin	+	hydrolysis
30033	28757 ChEBI	fructose	+	carbon source
119812	606565 ChEBI	hippurate	+	hydrolysis
119812	15792 ChEBI	malonate	-	assimilation
119812	17632 ChEBI	nitrate	-	reduction
119812	16301 ChEBI	nitrite	-	reduction
30033	18257 ChEBI	ornithine	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119812	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119812	15688 ChEBI	acetoin	-
119812	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119812	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
119812	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
119812	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
119812	caseinase	-	3.4.21.50
30033	catalase	+	1.11.1.6
119812	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
30033	cytochrome oxidase	+	1.9.3.1
119812	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119812	gamma-glutamyltransferase	+	2.3.2.2
30033	gelatinase	+
119812	gelatinase	+/-
119812	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119812	lipase	-
68382	lipase (C 14)	-		from API zym
119812	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119812	ornithine decarboxylase	-	4.1.1.17
119812	oxidase	+
119812	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
119812	tryptophan deaminase	-
119812	tween esterase	-
119812	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119812	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
5830	sediment sample of getbol	Korea, Ganghwa island	Republic of Korea	KOR	Asia
67771	From tidal flat sediment	Ganghwa Island	Republic of Korea	KOR	Asia	37.5922	126.457 37.5922/126.457
119812	Environment, Sediment sample of getbol	Ganghwa island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY264839 (>99% sequence identity) for Algoriphagus from Microbeatlas

Aquatic Samples	282
Soil Samples	82
Animal Samples	32
Plant Samples	24
Total Samples	420

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5830	1	Risk group (German classification) According to TRBA 466
119812	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2698536714 annotated assembly for Algoriphagus halophilus DSM 15292	scaffold	GCA_900129785	226505.5	2698536714	226505	76.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5830	Algoriphagus halophilus strain JC2051 16S ribosomal RNA gene, partial sequence	AY264839	1440		226505

GC content

@ref	GC-content (mol%)
30033	37
67771	37.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algoriphagus halophilus DSM 15292
NCBI: GCA_900129785

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.90	no
125439	motility	BacteriaNetⓘ	no	71.60	no
125439	gram_stain	BacteriaNetⓘ	negative	97.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus halophilus DSM 15292
NCBI: GCA_900129785.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.49	yes
125438	anaerobic	anaerobicⓘ	no	91.91	yes
125438	aerobic	aerobicⓘ	yes	85.59	yes
125438	spore-forming	spore-formingⓘ	no	85.94	yes
125438	thermophilic	thermophileⓘ	no	97.40	yes
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation and Plant Growth Promotion Effect of Endophytic Siderophore-Producing Bacteria: A Study on Halophyte Sesuvium portulacastrum.	Cen X, Li H, Zhang Y, Huang L, Luo Y.	Plants (Basel)	10.3390/plants13192703	2024
Phylogeny	Algoriphagus aestuarii sp. nov., a member of the Cyclobacteriaceae isolated from a tidal-flat sediment of the Yellow Sea in Korea.	Jung YT, Lee JS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000434	2015
Phylogeny	Algoriphagus chungangensis sp. nov., isolated from a tidal flat sediment.	Kang H, Weerawongwiwat V, Jung MY, Myung SC, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.039214-0	2012
Phylogeny	Algoriphagus lutimaris sp. nov., isolated from a tidal flat sediment.	Park S, Kang SJ, Oh KH, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.012682-0	2009
Phylogeny	Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment.	Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.02861-0	2004

References

#5830	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15292
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30033	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26396 (see below)
#36717	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119812	Collection of Institut Pasteur ; Curators of the CIP; CIP 108304
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algoriphagus halophilus (DSM 15292, IMSNU 14013, KCTC 12051)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900129785

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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