Sporobacter termitidis (DSM 10068, SYR)

Name: Sporobacter termitidis (DSM 10068, SYR)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17687

Type strain

Strain Designation SYR

Culture col. no. DSM 10068 SYR

NCBI tax ID(s) 1123282 44749

Special Collections DSMZ

History <- J.-L. Garcia, Université de Provence, Marseille, France; SYR <- I. Grech-Mora {1994}

Links

Sporobacter termitidis SYR is an anaerobe, mesophilic prokaryote that was isolated from wood-feeding termite Nasutitermes lujae.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 48743

DSM 10068

@ref 20215

Last LPSN update 2026-02-09 11:22:17

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Sporobacter

Species Sporobacter termitidis

Full scientific name Sporobacter termitidis Grech-Mora et al. 1996

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.8

Colony morphology

3793

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3793	SPOROBACTER MEDIUM (DSMZ Medium 711)		Medium recipe at MediaDive	Name: SPOROBACTER MEDIUM (DSMZ Medium 711) Composition: Na2CO3 1.49551 g/l trans-3,4,5-trimethoxycinnamate 1.18644 g/l NH4Cl 0.997009 g/l NaCl 0.598205 g/l Yeast extract 0.498504 g/l Na-acetate x 3 H2O 0.498504 g/l K2HPO4 0.299103 g/l KH2PO4 0.299103 g/l L-Cysteine HCl x H2O 0.299103 g/l Na2S x 9 H2O 0.299103 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.0997009 g/l KCl 0.0997009 g/l HCl 0.00373878 g/l FeCl2 x 4 H2O 0.00224327 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000284148 g/l MnCl2 x 4 H2O 0.000149551 g/l ZnCl2 0.000104686 g/l Pyridoxine hydrochloride 9.97009e-05 g/l Na2MoO4 x 2 H2O 5.38385e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l NiCl2 x 6 H2O 3.58923e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 8.97308e-06 g/l CuCl2 x 2 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3793	positive	growth	35	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3793	anaerobe
125439	obligate anaerobe	96.2

Spore formation

@ref	Spore formation	Confidence
125439		92.7

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	isoleucine metabolism	100	8 of 8
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	pyrimidine metabolism	93.33	42 of 45
66794	NAD metabolism	88.89	16 of 18
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	phenylalanine metabolism	84.62	11 of 13
66794	cellulose degradation	80	4 of 5
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	purine metabolism	78.72	74 of 94
66794	valine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	vitamin B12 metabolism	76.47	26 of 34
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	alanine metabolism	72.41	21 of 29
66794	propanol degradation	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	photosynthesis	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	leucine metabolism	69.23	9 of 13
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	serine metabolism	66.67	6 of 9
66794	histidine metabolism	65.52	19 of 29
66794	citric acid cycle	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	lysine metabolism	57.14	24 of 42
66794	cysteine metabolism	55.56	10 of 18
66794	non-pathway related	55.26	21 of 38
66794	proline metabolism	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	lipid metabolism	51.61	16 of 31
66794	coenzyme M biosynthesis	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	pantothenate biosynthesis	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	arginine metabolism	45.83	11 of 24
66794	vitamin B6 metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	sulfate reduction	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	tyrosine metabolism	35.71	5 of 14
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	ascorbate metabolism	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	phenol degradation	30	6 of 20
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	androgen and estrogen metabolism	25	4 of 16
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	degradation of sugar acids	24	6 of 25

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body Product	#Plant	#Timber

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
3793	wood-feeding termite Nasutitermes lujae	Nasutitermes lujae	M´Balmayo forest	Cameroon	CMR	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3793	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2585428085 annotated assembly for Sporobacter termitidis DSM 10068	scaffold	GCA_900130065	1123282.4	2585428085	1123282	68.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3793	T.aceticus gene for 16S ribosomal RNA	Z49863	1507		44749

GC content

@ref	GC-content (mol%)	Method
3793	57	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporobacter termitidis DSM 10068
NCBI: GCA_900130065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.70	no
125439	motility	BacteriaNetⓘ	no	61.00	no
125439	gram_stain	BacteriaNetⓘ	negative	93.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	96.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporobacter termitidis DSM 10068 DSM 10068
NCBI: GCA_900130065.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.40	no
125438	anaerobic	anaerobicⓘ	yes	87.61	yes
125438	aerobic	aerobicⓘ	no	91.35	no
125438	spore-forming	spore-formingⓘ	yes	56.61	no
125438	thermophilic	thermophileⓘ	no	87.35	yes
125438	flagellated	motile2+ⓘ	yes	66.77	no

Literature

Title	Authors	Journal	DOI	Year
Lacticaseibacillus rhamnosus CA15 (DSM 33960) as a Candidate Probiotic Strain for Human Health.	Pino A, Vaccalluzzo A, Caggia C, Balzaretti S, Vanella L, Sorrenti V, Ronkainen A, Satokari R, Randazzo CL.	Nutrients	10.3390/nu14224902	2022

References

#3793	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10068
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporobacter termitidis (DSM 10068, SYR)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900130065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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