Name: Ruminococcus gauvreauii CCRI-16110
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17685

Type strain:

Species: Ruminococcus gauvreauii

Strain Designation: CCRI-16110

Culture col. no.: DSM 19829, CCUG 54292, JCM 14987, NML 060141, CIP 109512

Strain history: CCUG 54292 <-- M.-C. Domingo and M. G. Bergeron CCRI-16110.

NCBI tax ID(s): 1123075 (strain), 438033 (species)

SI-ID 401429

DSM 19829, CCUG 54292

Section

Ruminococcus gauvreauii CCRI-16110 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faecal specimen.

coccus-shaped
Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Ruminococcus*
	Species	**Ruminococcus gauvreauii**
	Full Scientific Name (LPSN)	Ruminococcus gauvreauii Domingo et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32285]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32285]	Cell width	0.75 µm

[Ref.: #32285]	Cell shape	coccus-shaped

[Ref.: #32285]	Motility	no

[Ref.: #60126]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8338]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8338]

Culture medium growth

[Ref.: #8338]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8338]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8338]	growth	37 °C
[Ref.: #32285]	growth	35-37 °C
[Ref.: #60126]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8338]	Temperature range	mesophilic
[Ref.: #32285]	Temperature range	mesophilic
[Ref.: #60126]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8338]	Oxygen tolerance	anaerobe
[Ref.: #32285]	Oxygen tolerance	anaerobe
[Ref.: #60126]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.691

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #32285]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8338]	12684	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8338]	12683	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8338]	Sample type/isolated from	human faecal specimen
[Ref.: #8338]	Geographic location (country and/or sea, region)	Quebec
[Ref.: #8338]	Country	Canada
[Ref.: #8338]	Country ISO 3 Code	CAN
[Ref.: #8338]	Continent	North America

[Ref.: #60126]	Sample type/isolated from	Human feces (rectal swab)
[Ref.: #60126]	Sampling date	2005-12-14
[Ref.: #60126]	Geographic location (country and/or sea, region)	Québec,Montréal
[Ref.: #60126]	Country	Canada
[Ref.: #60126]	Country ISO 3 Code	CAN
[Ref.: #60126]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Specimen
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC269264 (>99% sequence identity) for Ruminococcus gauvreauii subclade from Microbeatlas

Aquatic Samples	14
Soil Samples	12
Animal Samples	1261
Plant Samples	3
Total Samples	1290

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8338]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ruminococcus gauvreauii gene for 16S ribosomal RNA, partial sequence, strain: JCM 14987	LC269264	1473	ENA	438033 tax ID
[Ref.: #8338]	Ruminococcus gauvreauii strain CCRI-16110 16S ribosomal RNA gene, partial sequence	EF529620	1456	ENA	438033 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ruminococcus gauvreauii DSM 19829	GCA_000425525	scaffold	GenBank	1123075 tax ID
[Ref.: #66792]	Ruminococcus gauvreauii DSM 19829	1123075.3	wgs	PATRIC	1123075 tax ID	*
[Ref.: #66792]	Ruminococcus gauvreauii DSM 19829	2524023243	draft	JGI IMG/M	1123075 tax ID	*
[Ref.: #66792]	Ruminococcus gauvreauii DSM 19829	GCA_025151995	complete	GenBank	438033 tax ID	*
[Ref.: #66792]	Ruminococcus gauvreauii strain DSM 19829	438033.9	complete	PATRIC	438033 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ruminococcus gauvreauii DSM 19829 DSM 19829 NCBI: GCA_000425525.1
[Ref.: #69481]	spore-forming	yes	57	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruminococcus gauvreauii DSM 19829 NCBI: GCA_025151995.1
[Ref.: #69480]	motile	no	88.465	no
[Ref.: #69480]	flagellated	no	91.293	yes
[Ref.: #69480]	gram-positive	yes	90.765	yes
[Ref.: #69480]	anaerobic	yes	98.725	yes
[Ref.: #69480]	aerobic	no	98.003	yes
[Ref.: #69480]	halophile	no	89.547	no
[Ref.: #69480]	spore-forming	yes	55.64	no
[Ref.: #69480]	glucose-ferment	yes	56.278	no
[Ref.: #69480]	thermophile	no	99.058	yes
[Ref.: #69480]	glucose-util	yes	89.362	no

Availability in culture collections External links

[Ref.: #8338]

Culture collection no.

DSM 19829, CCUG 54292, JCM 14987, NML 060141, CIP 109512

[Ref.: #86676]

SI-ID 401429

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ruminococcus gauvreauii sp. nov., a glycopeptide-resistant species isolated from a human faecal specimen.	Domingo MC, Huletsky A, Boissinot M, Bernard KA, Picard FJ, Bergeron MG	Int J Syst Evol Microbiol	10.1099/ijs.0.65259-0	2008	*

References

#8338

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19829

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32285

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28525 (see below)

#60126 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54292

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86676

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401429.1 )

#28525

IJSEM 1393 2008 ( DOI 10.1099/ijs.0.65259-0 , PubMed 18523184 )

* These data were automatically processed and therefore are not curated

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Ruminococcus gauvreauii DSM 19829 DSM 19829

Ruminococcus gauvreauii DSM 19829

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