Chryseobacterium indologenes (DSM 114485, NiuAA5)

Name: Chryseobacterium indologenes (DSM 114485, NiuAA5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 176846

Type strain

Strain Designation NiuAA5

Culture col. no. DSM 114485 NiuAA5

NCBI tax ID(s) 253

Special Collections Maize

History <- M. Kleiner and A. Garrell, North Carolina State University, Dep. of Plant and Microbial Biology; <- B. Niu, Harvard Medical School, Dept. of Microbiology and Immunology, Boston, MA, USA; NiuAA5

Links

Chryseobacterium indologenes NiuAA5 is a human pathogen that was isolated from Maize root grown in field soil.

human pathogen

Name and taxonomic classification

SI-ID 285111

DSM 114485

@ref 20215

Last LPSN update 2026-02-09 11:42:37

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium indologenes

Full scientific name Chryseobacterium indologenes (Yabuuchi et al. 1983) Vandamme et al. 1994

Synonyms (1)

Flavobacterium indologenes

BacDive ID	Other strains from **Chryseobacterium indologenes** (58)	Type strain
5671	C. indologenes DSM 16777, ATCC 29897, CCUG 14483, CDC 3716, ... (type strain)
134710	C. indologenes Carton, CIP 109969
134973	C. indologenes CIP 109967
135113	C. indologenes 590.83, CIP 100344
135152	C. indologenes 682.78, CIP 103065
135153	C. indologenes 279.75, CIP 103069
135157	C. indologenes R 852, CIP 103094
135158	C. indologenes R 851, CIP 103095
135159	C. indologenes R 627, CIP 103096
135188	C. indologenes 189.79, CIP 103055
135788	C. indologenes 33.78, B53981, CIP 78.48
135833	C. indologenes 522.84, CIP 100992
135857	C. indologenes 162-86, CIP 102215
136164	C. indologenes 729, 648.75, CIP 103074
136172	C. indologenes R 705, CIP 103102
136234	C. indologenes CIP 103626, ATCC 49471
137230	C. indologenes 2398, R 858, CIP 103092
137346	C. indologenes 469.83, CIP 100269
137815	C. indologenes 215.84, CIP 100761
137991	C. indologenes 419-86, CIP 102419
138406	C. indologenes R 760, CIP 103101
138609	C. indologenes 241.75, CIP 103068
138769	C. indologenes 638.75, CIP 103072
139084	C. indologenes 792.84, CIP 101166
139440	C. indologenes 177-77, CIP 111041
139448	C. indologenes Millo, CIP 111085, CIP 200792
139449	C. indologenes Rouault 2401, CIP 111087, CIP 200799
139450	C. indologenes Big, CIP 111080, CIP 200737
139451	C. indologenes Kac, CIP 111083, CIP 200783
139452	C. indologenes Gallet, CIP 111084, CIP 200791
139478	C. indologenes CIP 111070, CIP 200648
139479	C. indologenes Lair, CIP 111074, CIP 200703
139512	C. indologenes Tchang, CIP 111068, CIP 200630
139513	C. indologenes Delvoix, CIP 111069, CIP 200634
139514	C. indologenes Ben, CIP 111073, CIP 200683
139553	C. indologenes Bordin, CIP 111079, CIP 200726
139599	C. indologenes Gouélian, CIP 109982
142408	C. indologenes CCUG 12408
143842	C. indologenes CCUG 21463
144077	C. indologenes CCUG 22795
144636	C. indologenes CCUG 25993
144828	C. indologenes CCUG 26680
147966	C. indologenes CCUG 34592
149934	C. indologenes CCUG 38711
150974	C. indologenes CCUG 42919
150985	C. indologenes CCUG 42938
151781	C. indologenes CCUG 44868
152178	C. indologenes CCUG 45982
152707	C. indologenes CCUG 47431
153574	C. indologenes CCUG 50232
154777	C. indologenes CCUG 55149
156350	C. indologenes CCUG 61253
156754	C. indologenes CCUG 64871
172960	C. indologenes CIP 109978, Van Dick
172961	C. indologenes R647, Peslerbe, CIP 109988
172962	C. indologenes Rouault 2398, CIP 111086, CIP 200798
175138	C. indologenes Dres_ChryseobactSp_12, DSM 107724
175139	C. indologenes Dres_ChryseobactSp_14, DSM 107732

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
125913	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
125913	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
125913	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	+	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	+	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
125913	-	+	-	-	+	+	+	+	-	-	-	+/-	-	+/-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
125913	Maize root grown in field soil	Boston	USA	USA	North America	42.3041	-71.1214 42.3041/-71.1214

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
125913			2	Risk group (German classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68369	Automatically annotated from API 20NE .
#125913	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 114485
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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