Name: Anaerotruncus colihominis 277
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17679

Type strain:

Species: Anaerotruncus colihominis

Strain Designation: 277

Culture col. no.: DSM 17241, CCUG 45055, CIP 107754, WAL 14565, JCM 15631, VTT E-062942

Strain history: CIP <- 2002, CCUG <- H. Sarah, London, UK <- D. Molitoris, Sydney Finegold, California, USA: strain 277 <- Finegold: strain WAL 14565

NCBI tax ID(s): 445972 (strain), 169435 (species)

SI-ID 131413

CCUG 45055, CIP 107754, DSM 17241, VTT E-062942, JCM 15631

Other strains from Anaerotruncus colihominis

A. colihominis JM4-15, DSM 28734
A. colihominis CCUG 65088
A. colihominis CCUG 69734
A. colihominis JCM 31255

Section

Anaerotruncus colihominis 277 is an anaerobe, mesophilic, Gram-positive bacterium that forms irregular colonies and was isolated from human feces, autistic child.

colony-forming
Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Anaerotruncus*
	Species	**Anaerotruncus colihominis**
	Full Scientific Name (LPSN)	Anaerotruncus colihominis Lawson et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29914]	Gram stain	positive
[Ref.: #26285]	Gram stain	positive
[Ref.: #118701]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #29914]	Cell length	3.5 µm
[Ref.: #26285]	Cell length	2-5 µm

[Ref.: #29914]	Cell width	0.5 µm
[Ref.: #26285]	Cell width	0.5 µm

[Ref.: #29914]	Cell shape	rod-shaped
[Ref.: #26285]	Cell shape	rod-shaped
[Ref.: #118701]	Cell shape	rod-shaped

[Ref.: #29914]	Motility	no
[Ref.: #26285]	Motility	no
[Ref.: #118701]	Motility	yes

[Ref.: #26285]	Colony size	2-3 mm
[Ref.: #26285]	Colony color	grey
[Ref.: #26285]	Colony shape	irregular
[Ref.: #26285]	Incubation period	2 days
[Ref.: #26285]	Cultivation medium used	Brucella blood agar (Anaerobe Systems)

[Ref.: #29914]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6848]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #6848]

Culture medium growth

[Ref.: #6848]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6848]

Culture medium composition

expand / minimize

[Ref.: #6848]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6848]

Culture medium growth

[Ref.: #6848]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6848]

Culture medium composition

expand / minimize

[Ref.: #33163]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #33163]

Culture medium growth

[Ref.: #33163]

Culture medium composition

expand / minimize

[Ref.: #26285]

Culture medium

Brucella blood agar (Anaerobe Systems)

[Ref.: #26285]

Culture medium growth

[Ref.: #118701]

Culture medium

CIP Medium 6

[Ref.: #118701]

Culture medium growth

[Ref.: #118701]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6848]	growth	37 °C
[Ref.: #29914]	growth	36-40 °C
[Ref.: #29914]	optimum	37 °C
[Ref.: #33163]	growth	37 °C
[Ref.: #56619]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #118701]	growth	37 °C

[Ref.: #6848]	Temperature range	mesophilic
[Ref.: #29914]	Temperature range	mesophilic
[Ref.: #33163]	Temperature range	mesophilic
[Ref.: #56619]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #118701]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29914]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6848]	Oxygen tolerance	anaerobe
[Ref.: #29914]	Oxygen tolerance	anaerobe
[Ref.: #56619]	Oxygen tolerance	anaerobe
[Ref.: #118701]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #29914]	Ability of spore formation	no
[Ref.: #26285]	Ability of spore formation	no
[Ref.: #118701]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	no Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %97.025

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #26285]	2-deoxyadenosine ChEBI	+	assimilation
[Ref.: #26285]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #26285]	2-oxopentanoate ChEBI	+	assimilation
[Ref.: #26285]	3-O-methyl-D-glucose ChEBI	+	assimilation
[Ref.: #26285]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #26285]	arabinose ChEBI	-	growth
[Ref.: #26285]	arbutin ChEBI	+	growth
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #29914]	cellobiose ChEBI	+	carbon source
[Ref.: #26285]	cellobiose ChEBI	+	assimilation
[Ref.: #118701]	cellobiose ChEBI	-	degradation
[Ref.: #26285]	cellulose ChEBI	-	hydrolysis
[Ref.: #26285]	cellulose ChEBI	+	growth
[Ref.: #118701]	D-arabinose ChEBI	-	degradation
[Ref.: #26285]	D-fructose ChEBI	+	assimilation
[Ref.: #118701]	D-fructose ChEBI	+	degradation
[Ref.: #26285]	D-galactose ChEBI	+	assimilation
[Ref.: #26285]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #118701]	D-glucose ChEBI	+	degradation
[Ref.: #26285]	D-mannose ChEBI	+	assimilation
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #26285]	D-trehalose ChEBI	+	assimilation
[Ref.: #118701]	D-xylose ChEBI	-	degradation
[Ref.: #26285]	dextrin ChEBI	+	assimilation
[Ref.: #26285]	esculin ChEBI	-	hydrolysis
[Ref.: #118701]	esculin ChEBI	-	hydrolysis
[Ref.: #29914]	fructose ChEBI	+	carbon source
[Ref.: #26285]	fructose ChEBI	+	growth
[Ref.: #29914]	galactose ChEBI	+	carbon source
[Ref.: #29914]	gelatin ChEBI	+	carbon source
[Ref.: #26285]	gelatin ChEBI	-	hydrolysis
[Ref.: #29914]	glucose ChEBI	+	carbon source
[Ref.: #26285]	glucose ChEBI	+	growth
[Ref.: #26285]	inosine ChEBI	+	assimilation
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #26285]	L-malate ChEBI	+	assimilation
[Ref.: #26285]	L-valine ChEBI	+	assimilation
[Ref.: #26285]	lactose ChEBI	-	growth
[Ref.: #118701]	lactose ChEBI	-	degradation
[Ref.: #29914]	maltose ChEBI	+	carbon source
[Ref.: #26285]	maltose ChEBI	-	growth
[Ref.: #26285]	maltose ChEBI	+	assimilation
[Ref.: #118701]	maltose ChEBI	-	degradation
[Ref.: #26285]	maltotriose ChEBI	+	assimilation
[Ref.: #26285]	mannitol ChEBI	-	growth
[Ref.: #29914]	mannose ChEBI	+	carbon source
[Ref.: #26285]	mannose ChEBI	+	growth
[Ref.: #26285]	melezitose ChEBI	-	growth
[Ref.: #26285]	melibiose ChEBI	-	growth
[Ref.: #26285]	methyl beta-D-galactoside ChEBI	+	assimilation
[Ref.: #26285]	methyl beta-D-glucopyranoside ChEBI	+	assimilation
[Ref.: #26285]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #26285]	myo-inositol ChEBI	-	growth
[Ref.: #26285]	N-acetyl-D-mannosamine ChEBI	+	assimilation
[Ref.: #26285]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #26285]	nitrate ChEBI	-	reduction
[Ref.: #118701]	nitrate ChEBI	-	reduction
[Ref.: #118701]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #118701]	nitrite ChEBI	-	reduction
[Ref.: #26285]	palatinose ChEBI	+	assimilation
[Ref.: #26285]	peptone	-	growth
[Ref.: #26285]	pyruvate ChEBI	+	assimilation
[Ref.: #26285]	raffinose ChEBI	-	growth
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #26285]	rhamnose ChEBI	-	growth
[Ref.: #26285]	ribose ChEBI	-	growth
[Ref.: #26285]	salicin ChEBI	-	growth
[Ref.: #118701]	salicin ChEBI	-	degradation
[Ref.: #26285]	serine ChEBI	+	assimilation
[Ref.: #26285]	sorbitol ChEBI	-	growth
[Ref.: #26285]	starch ChEBI	-	growth
[Ref.: #118701]	sucrose ChEBI	+	degradation
[Ref.: #26285]	thymidine ChEBI	+	assimilation
[Ref.: #29914]	trehalose ChEBI	+	carbon source
[Ref.: #26285]	turanose ChEBI	+	assimilation
[Ref.: #26285]	urea ChEBI	-	hydrolysis
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #26285]	uridine ChEBI	+	assimilation
[Ref.: #26285]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #26285]	colistin ChEBI				yes	10	µg (disc)
[Ref.: #26285]	kanamycin ChEBI	yes	1000	µg (disc)
[Ref.: #26285]	vancomycin ChEBI	yes	5	µg (disc)

	Metabolite	Production
[Ref.: #26285]	acetate ChEBI	yes
[Ref.: #26285]	butyrate ChEBI	yes
[Ref.: #29914]	indole ChEBI	yes
[Ref.: #26285]	indole ChEBI	yes
[Ref.: #118701]	indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29914]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #26285]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #26285]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #26285]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #26285]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #26285]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #26285]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A, API zym
[Ref.: #26285]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #26285]	arginine arylamidase	-
[Ref.: #26285]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #118701]	beta-galactosidase	-	3.2.1.23
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #26285]	beta-glucosidase	-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #26285]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #26285]	catalase	-	1.11.1.6
[Ref.: #118701]	catalase	-	1.11.1.6
[Ref.: #26285]	chymotrypsin	-	3.4.4.5
[Ref.: #26285]	cystine arylamidase	-	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #26285]	esterase (C 4)	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #26285]	esterase Lipase (C 8)	-
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118701]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #118701]	gelatinase	-
[Ref.: #26285]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #26285]	glutamyl-glutamate arylamidase	-
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #26285]	glycin arylamidase	-
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #26285]	histidine arylamidase	-
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #26285]	leucine arylamidase	-	3.4.11.1
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A, API zym
[Ref.: #26285]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #26285]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #26285]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118701]	oxidase	-
[Ref.: #26285]	phenylalanine arylamidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #26285]	phosphoamidase	-	3.9.1.1
[Ref.: #26285]	proline-arylamidase	-	3.4.11.5
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #26285]	pyroglutamic acid arylamidase	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #26285]	serine arylamidase	-
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #26285]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #26285]	tyrosine arylamidase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #118701]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #26285]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6848]	12645	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #6848]	12644	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118701]	10626	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	palmitate biosynthesis	90.91	20 of 22
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B12 metabolism	76.47	26 of 34
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	valine metabolism	66.67	6 of 9
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	tetrahydrofolate metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	flavin biosynthesis	53.33	8 of 15
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	non-pathway related	50	19 of 38
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	lipid metabolism	48.39	15 of 31
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	isoprenoid biosynthesis	42.31	11 of 26
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6848]	Sample type/isolated from	human feces, autistic child
[Ref.: #6848]	Geographic location (country and/or sea, region)	Chicago
[Ref.: #6848]	Country	USA
[Ref.: #6848]	Country ISO 3 Code	USA
[Ref.: #6848]	Continent	North America

[Ref.: #26285]	Sample type/isolated from	faecal material of a 71-month old autistic child from the Rushs Childrens Hospital
[Ref.: #26285]	Geographic location (country and/or sea, region)	Chicago
[Ref.: #26285]	Country	USA
[Ref.: #26285]	Country ISO 3 Code	USA
[Ref.: #26285]	Continent	North America

[Ref.: #56619]	Sample type/isolated from	Human feces from autistic child
[Ref.: #56619]	Geographic location (country and/or sea, region)	California
[Ref.: #56619]	Country	USA
[Ref.: #56619]	Country ISO 3 Code	USA
[Ref.: #56619]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human feces

[Ref.: #118701]	Sample type/isolated from	Human, Feces
[Ref.: #118701]	Country	United States of America
[Ref.: #118701]	Country ISO 3 Code	USA
[Ref.: #118701]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	#Child
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ315980 (>99% sequence identity) for Anaerotruncus colihominis subclade from Microbeatlas

Aquatic Samples	361
Soil Samples	286
Animal Samples	52440
Plant Samples	148
Total Samples	53235

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6848]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118701]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6848]	Ruminococcus sp. 14565 partial 16S rRNA gene, strain 14565	AJ315980	1393	ENA	445972 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Anaerotruncus colihominis DSM 17241 DSM 17241	GCA_000154565	scaffold	GenBank	445972 tax ID
[Ref.: #66792]	Anaerotruncus colihominis DSM 17241	445972.6	wgs	PATRIC	445972 tax ID	*
[Ref.: #66792]	Anaerotruncus colihominis DSM 17241	641736271	draft	JGI IMG/M	445972 tax ID	*
[Ref.: #66792]	Anaerotruncus colihominis DSM 17241	GCA_025146135	complete	GenBank	169435 tax ID	*
[Ref.: #66792]	Anaerotruncus colihominis strain DSM 17241	169435.95	complete	PATRIC	169435 tax ID	*

[Ref.: #6848]	GC-content	54 mol%
[Ref.: #26285]	GC-content	54 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerotruncus colihominis DSM 17241 PATRIC: 445972.6
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerotruncus colihominis DSM 17241 NCBI: GCA_025146135.1
[Ref.: #69480]	motile	yes	60.268	yes
[Ref.: #69480]	flagellated	no	87.78	yes
[Ref.: #69480]	gram-positive	yes	87.569	yes
[Ref.: #69480]	anaerobic	yes	99.526	no
[Ref.: #69480]	aerobic	no	97.298	yes
[Ref.: #69480]	halophile	no	91.391	no
[Ref.: #69480]	spore-forming	no	76.051	yes
[Ref.: #69480]	glucose-ferment	yes	63.438	no
[Ref.: #69480]	thermophile	no	92.541	yes
[Ref.: #69480]	glucose-util	yes	85.718	yes

Availability in culture collections External links

[Ref.: #6848]

Culture collection no.

DSM 17241, CCUG 45055, CIP 107754, WAL 14565, JCM 15631, VTT E-062942

[Ref.: #86670]

SI-ID 131413

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Paludicola psychrotolerans gen. nov., sp. nov., a novel psychrotolerant chitinolytic anaerobe of the family Ruminococcaceae.	Li Y, Zhang LL, Liu L, Tian YQ, Liu XF, Li WJ, Dai YM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002260	2017	*
Phylogeny	Harryflintia acetispora gen. nov., sp. nov., isolated from chicken caecum.	Petzoldt D, Breves G, Rautenschlein S, Taras D	Int J Syst Evol Microbiol	10.1099/ijsem.0.001317	2016	*
Phylogeny	Anaerotruncus colihominis gen. nov., sp. nov., from human faeces.	Lawson PA, Song Y, Liu C, Molitoris DR, Vaisanen ML, Collins MD, Finegold SM	Int J Syst Evol Microbiol	10.1099/ijs.0.02653-0	2004	*
Phylogeny	Anaerotruncus massiliensis sp. nov., a succinate-producing bacterium isolated from human stool from an obese patient after bariatric surgery.	Togo AH, Diop A, Dubourg G, Khelaifia S, Richez M, Armstrong N, Maraninchi M, Fournier PE, Raoult D, Million M	New Microbes New Infect	10.1016/j.nmni.2019.01.004	2019	*
Pathogenicity	Sodium Butyrate Attenuated Diabetes-Induced Intestinal Inflammation by Modulating Gut Microbiota.	Liu L, Chen Y, Wu Q, Shu A, Sun J	Evid Based Complement Alternat Med	10.1155/2022/4646245	2022	*
Phylogeny	Draft genomes and descriptions of Urmitella timonensis gen. nov., sp. nov. and Marasmitruncus massiliensis gen. nov., sp. nov., isolated from severely malnourished African children using culturomics.	Bellali S, Haddad G, Pham TP, Iwaza R, Ibrahim A, Armstrong N, Fadlane A, Couderc C, Diallo A, Sokhna C, Million M, Raoult D, Tidjani Alou M	Antonie Van Leeuwenhoek	10.1007/s10482-022-01777-x	2022	*
	Cornuside Alleviates Diabetes Mellitus-Induced Testicular Damage by Modulating the Gut Microbiota.	Liu L, Shu A, Zhu Y, Chen Y	Evid Based Complement Alternat Med	10.1155/2021/5301942	2021	*

References

#6848

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17241

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#26285

IJSEM 413 2004 ( DOI 10.1099/ijs.0.02653-0 , PubMed 15023953 )

#29914

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26285 (see below)

#33163 ; Curators of the CIP;
#56619 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45055

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86670

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131413.1 )

#118701 Collection of Institut Pasteur ; Curators of the CIP; CIP 107754

#26285

IJSEM 413 2004 ( DOI 10.1099/ijs.0.02653-0 , PubMed 15023953 )

* These data were automatically processed and therefore are not curated

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Anaerotruncus colihominis DSM 17241

Anaerotruncus colihominis DSM 17241

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