Anaerotruncus colihominis (DSM 17241, CCUG 45055, CIP 107754)

Name: Anaerotruncus colihominis (DSM 17241, CCUG 45055, CIP 107754)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17679

Type strain

Strain Designation 277

Culture col. no. DSM 17241 CCUG 45055 CIP 107754 WAL 14565 JCM 15631 2 more

NCBI tax ID(s) 445972 169435

Special Collections DSMZ CCUG JCM CIP Literature strains

History DSMZ <- CCUG <-P.A. Lawson, UK <-D.Molitoris, S.Finegold, USA; WAL 14565 <- Rush Childrens Hospital JCM <-- CCUG 45055 <-- P. A. Lawson <-- H. N. Shah <-- D. R. Molitoris <-- S. M. Finegold WAL 14565. CIP <- 2002, CCUG <- H. Sarah, London, UK <- D. Molitoris, Sydney Finegold, California, USA: strain 277 <- Finegold: strain WAL 14565

Links

Anaerotruncus colihominis 277 is an anaerobe, Gram-positive, rod-shaped bacterium that forms irregular colonies and was isolated from human feces, autistic child.

Gram-positive rod-shaped colony-forming anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131413

CCUG 45055,CIP 107754,DSM 17241,VTT E-062942,JCM 15631

@ref 20215

Last LPSN update 2026-05-29 08:29:04

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Anaerotruncus

Species Anaerotruncus colihominis

Full scientific name Anaerotruncus colihominis Lawson et al. 2004

BacDive ID	Other strains from **Anaerotruncus colihominis** (4)	Type strain
131106	A. colihominis JM4-15, DSM 28734
156776	A. colihominis CCUG 65088
157144	A. colihominis CCUG 69734
163983	A. colihominis JCM 31255

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29914	positive	3.5 µm	0.5 µm	rod-shaped
26285	positive	2-5 µm	0.5 µm	rod-shaped
118701	positive			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used	Hemolysis ability
26285	2-3 mm	grey	irregular	2 days	Brucella blood agar (Anaerobe Systems)
118701						0

Pigmentation

29914

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6848	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)	Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
6848	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
33163	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
26285	Brucella blood agar (Anaerobe Systems)
118701	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6848	positive	growth	37
29914	positive	growth	36-40
29914	positive	optimum	37
33163	positive	growth	37
56619	positive	growth	37
67770	positive	growth	37
118701	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
29914	positive	growth	5.5-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6848	anaerobe
29914	anaerobe
56619	anaerobe
118701	anaerobe
125438	anaerobe	91.724
125439	obligate anaerobe	95.489

Spore formation

@ref	Spore formation
29914
26285
118701

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
26285	17256 ChEBI	2-deoxyadenosine	+	assimilation
26285	16763 ChEBI	2-oxobutanoate	+	assimilation
26285	28644 ChEBI	2-oxopentanoate	+	assimilation
26285	73918 ChEBI	3-O-methyl-D-glucose	+	assimilation
26285	17925 ChEBI	alpha-D-glucose	+	assimilation
26285	22599 ChEBI	arabinose	-	growth
26285	18305 ChEBI	arbutin	+	growth
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
29914	17057 ChEBI	cellobiose	+	carbon source
26285	17057 ChEBI	cellobiose	+	assimilation
118701	17057 ChEBI	cellobiose	-	degradation
26285	62968 ChEBI	cellulose	-	hydrolysis
26285	62968 ChEBI	cellulose	+	growth
118701	17108 ChEBI	D-arabinose	-	degradation
26285	15824 ChEBI	D-fructose	+	assimilation
118701	15824 ChEBI	D-fructose	+	degradation
26285	12936 ChEBI	D-galactose	+	assimilation
26285	18024 ChEBI	D-galacturonic acid	+	assimilation
118701	17634 ChEBI	D-glucose	+	degradation
26285	16024 ChEBI	D-mannose	+	assimilation
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
26285	16551 ChEBI	D-trehalose	+	assimilation
118701	65327 ChEBI	D-xylose	-	degradation
26285	23652 ChEBI	dextrin	+	assimilation
26285	4853 ChEBI	esculin	-	hydrolysis
118701	4853 ChEBI	esculin	-	hydrolysis
29914	28757 ChEBI	fructose	+	carbon source
26285	28757 ChEBI	fructose	+	growth
29914	28260 ChEBI	galactose	+	carbon source
29914	5291 ChEBI	gelatin	+	carbon source
26285	5291 ChEBI	gelatin	-	hydrolysis
29914	17234 ChEBI	glucose	+	carbon source
26285	17234 ChEBI	glucose	+	growth
26285	17596 ChEBI	inosine	+	assimilation
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
26285	15589 ChEBI	L-malate	+	assimilation
26285	16414 ChEBI	L-valine	+	assimilation
26285	17716 ChEBI	lactose	-	growth
118701	17716 ChEBI	lactose	-	degradation
29914	17306 ChEBI	maltose	+	carbon source
26285	17306 ChEBI	maltose	-	growth
26285	17306 ChEBI	maltose	+	assimilation
118701	17306 ChEBI	maltose	-	degradation
26285	61993 ChEBI	maltotriose	+	assimilation
26285	29864 ChEBI	mannitol	-	growth
29914	37684 ChEBI	mannose	+	carbon source
26285	37684 ChEBI	mannose	+	growth
26285	6731 ChEBI	melezitose	-	growth
26285	28053 ChEBI	melibiose	-	growth
26285	17540 ChEBI	methyl beta-D-galactoside	+	assimilation
26285	320055 ChEBI	methyl beta-D-glucopyranoside	+	assimilation
26285	51850 ChEBI	methyl pyruvate	+	assimilation
26285	17268 ChEBI	myo-inositol	-	growth
26285	63153 ChEBI	N-acetyl-D-mannosamine	+	assimilation
26285	506227 ChEBI	N-acetylglucosamine	+	assimilation
26285	17632 ChEBI	nitrate	-	reduction
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
118701	17632 ChEBI	nitrate	-	reduction
118701	17632 ChEBI	nitrate	+	respiration
118701	16301 ChEBI	nitrite	-	reduction
26285	18394 ChEBI	palatinose	+	assimilation
26285		peptone	-	growth
26285	15361 ChEBI	pyruvate	+	assimilation
26285	16634 ChEBI	raffinose	-	growth
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
26285	26546 ChEBI	rhamnose	-	growth
26285	33942 ChEBI	ribose	-	growth
26285	17814 ChEBI	salicin	-	growth
118701	17814 ChEBI	salicin	-	degradation
26285	17822 ChEBI	serine	+	assimilation
26285	30911 ChEBI	sorbitol	-	growth
26285	28017 ChEBI	starch	-	growth
118701	17992 ChEBI	sucrose	+	degradation
26285	17748 ChEBI	thymidine	+	assimilation
29914	27082 ChEBI	trehalose	+	carbon source
26285	32528 ChEBI	turanose	+	assimilation
26285	16199 ChEBI	urea	-	hydrolysis
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
26285	16704 ChEBI	uridine	+	assimilation
26285	18222 ChEBI	xylose	-	growth

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
26285	37943	colistin	10 µg (disc)
26285	6104	kanamycin		1000 µg (disc)
26285	28001	vancomycin		5 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
26285	30089 ChEBI	acetate
26285	17968 ChEBI	butyrate
29914	35581 ChEBI	indole
26285	35581 ChEBI	indole
118701	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29914	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
26285	6-phospho-beta-galactosidase	-	3.2.1.85
26285	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
26285	alkaline phosphatase	-	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
26285	alpha-arabinosidase	-	3.2.1.55
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
26285	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
26285	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
26285	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
26285	arginine arylamidase	-
26285	arginine dihydrolase	-	3.5.3.6
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
118701	beta-galactosidase	-	3.2.1.23
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
26285	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	+	3.2.1.21	from API zym
26285	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
26285	catalase	-	1.11.1.6
118701	catalase	-	1.11.1.6
26285	chymotrypsin	-	3.4.4.5
26285	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
26285	esterase (C 4)	-
68382	esterase (C 4)	+		from API zym
26285	esterase Lipase (C 8)	-
68382	esterase lipase (C 8)	+		from API zym
118701	gamma-glutamyltransferase	-	2.3.2.2
118701	gelatinase	-
26285	glutamate decarboxylase	-	4.1.1.15
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
26285	glutamyl-glutamate arylamidase	-
68380	glutamyl-glutamate arylamidase	-		from API rID32A
26285	glycin arylamidase	-
68380	glycin arylamidase	-		from API rID32A
26285	histidine arylamidase	-
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
26285	leucine arylamidase	-	3.4.11.1
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
26285	leucyl glycin arylamidase	-	3.4.11.1
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
26285	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
26285	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118701	oxidase	-
26285	phenylalanine arylamidase	-
68380	phenylalanine arylamidase	-		from API rID32A
26285	phosphoamidase	-	3.9.1.1
26285	proline-arylamidase	-	3.4.11.5
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
26285	pyroglutamic acid arylamidase	-
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
26285	serine arylamidase	-
68380	serine arylamidase	-		from API rID32A
26285	trypsin	-	3.4.21.4
68382	trypsin	-	3.4.21.4	from API zym
26285	tyrosine arylamidase	-
68380	tyrosine arylamidase	-		from API rID32A
118701	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
26285	valine arylamidase	-
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	palmitate biosynthesis	90.91	20 of 22
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	phenylalanine metabolism	76.92	10 of 13
66794	vitamin B12 metabolism	76.47	26 of 34
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	methionine metabolism	73.08	19 of 26
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	degradation of pentoses	67.86	19 of 28
66794	valine metabolism	66.67	6 of 9
66794	degradation of hexoses	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	oxidative phosphorylation	64.84	59 of 91
66794	glycolysis	64.71	11 of 17
66794	citric acid cycle	64.29	9 of 14
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	glycogen metabolism	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	proline metabolism	54.55	6 of 11
66794	vitamin B6 metabolism	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	leucine metabolism	53.85	7 of 13
66794	flavin biosynthesis	53.33	8 of 15
66794	tryptophan metabolism	52.63	20 of 38
66794	degradation of sugar acids	52	13 of 25
66794	butanoate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	lactate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	tyrosine metabolism	50	7 of 14
66794	lysine metabolism	50	21 of 42
66794	arginine metabolism	50	12 of 24
66794	sulfopterin metabolism	50	2 of 4
66794	non-pathway related	50	19 of 38
66794	ethanol fermentation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	lipid metabolism	48.39	15 of 31
66794	urea cycle	46.15	6 of 13
66794	pentose phosphate pathway	45.45	5 of 11
66794	ascorbate metabolism	45.45	10 of 22
66794	nitrate assimilation	44.44	4 of 9
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	metabolism of disaccharids	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	glutathione metabolism	28.57	4 of 14
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	carnitine metabolism	25	2 of 8
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	allantoin degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118701	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
6848	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-
6848	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Child
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
6848	human feces, autistic child	Homo sapiens	Chicago	USA	USA	North America
26285	faecal material of a 71-month old autistic child from the Rushs Childrens Hospital	Homo sapiens	Chicago	USA	USA	North America
56619	Human feces from autistic child	Homo sapiens	California	USA	USA	North America
67770	Human feces	Homo sapiens
118701	Human, Feces	Homo sapiens		United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AJ315980 (>99% sequence identity) for Anaerotruncus colihominis subclade from Microbeatlas

Aquatic Samples	361
Soil Samples	286
Animal Samples	52440
Plant Samples	148
Total Samples	53235

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6848	1	Risk group (German classification) According to TRBA 466
118701	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2514613v1 assembly for Anaerotruncus colihominis DSM 17241	complete	GCA_025146135	169435.95		169435	97.94
67770	ASM15456v1 assembly for Anaerotruncus colihominis DSM 17241	scaffold	GCA_000154565	445972.6	641736271	445972	68.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6848	Ruminococcus sp. 14565 partial 16S rRNA gene, strain 14565	AJ315980	1393		445972
124043	Anaerotruncus colihominis strain WAL 14565 16S ribosomal RNA gene, partial sequence.	PQ763961	1365		169435

GC content

@ref	GC-content (mol%)	Method
6848	54
26285	54	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2514613v1 assembly for Anaerotruncus colihominis DSM 17241
BV-BRC: 169435.95

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	95.49	no
125439	motility	BacteriaNetⓘ	no	61.17	no
125439	gram_stain	BacteriaNetⓘ	positive	41.07	no
125439	spore_formation	BacteriaNetⓘ	no	75.46	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerotruncus colihominis DSM 17241
NCBI: GCA_025146135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.56	yes
125438	anaerobic	anaerobicⓘ	yes	91.72	yes
125438	aerobic	aerobicⓘ	no	94.60	yes
125438	spore-forming	spore-formingⓘ	no	51.13	no
125438	thermophilic	thermophileⓘ	no	86.23	yes
125438	flagellated	motile2+ⓘ	yes	58.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Coarse-grained model of serial dilution dynamics in synthetic human gut microbiome.	Mahajan T, Maslov S.	PLoS Comput Biol	10.1371/journal.pcbi.1013222	2025
Metabolism	Potentially Bio-Accessible Metabolites from an Extract of Cornus mas Fruit after Gastrointestinal Digestion In Vitro and Gut Microbiota Ex Vivo Treatment.	Oledzka A, Cichocka K, Wolinski K, Melzig MF, Czerwinska ME.	Nutrients	10.3390/nu14112287	2022
	A Robust Metatranscriptomic Technology for Population-Scale Studies of Diet, Gut Microbiome, and Human Health.	Hatch A, Horne J, Toma R, Twibell BL, Somerville KM, Pelle B, Canfield KP, Genkin M, Banavar G, Perlina A, Messier H, Klitgord N, Vuyisich M.	Int J Genomics	10.1155/2019/1718741	2019
	Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization.	Jin X, Yu FB, Yan J, Weakley AM, Dubinkina V, Meng X, Pollard KS.	Nat Commun	10.1038/s41467-023-39121-0	2023
	The SHOCT domain: a widespread domain under-represented in model organisms.	Eberhardt RY, Bartholdson SJ, Punta M, Bateman A.	PLoS One	10.1371/journal.pone.0057848	2013
Metabolism	Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.	Wlodarska M, Luo C, Kolde R, d'Hennezel E, Annand JW, Heim CE, Krastel P, Schmitt EK, Omar AS, Creasey EA, Garner AL, Mohammadi S, O'Connell DJ, Abubucker S, Arthur TD, Franzosa EA, Huttenhower C, Murphy LO, Haiser HJ, Vlamakis H, Porter JA, Xavier RJ.	Cell Host Microbe	10.1016/j.chom.2017.06.007	2017
Genetics	The Primary Research on the Gut Microbes in KKAy Mice.	Li Y, Han L, Xu M, Guo J, Feng M, Wang X.	Indian J Microbiol	10.1007/s12088-013-0410-3	2014
Metabolism	Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.	Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.	Cell	10.1016/j.cell.2023.05.037	2023
	Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment.	Dobrijevic D, Abraham AL, Jamet A, Maguin E, van de Guchte M.	PLoS One	10.1371/journal.pone.0159030	2016
Metabolism	Discovery of Azurin-Like Anticancer Bacteriocins from Human Gut Microbiome through Homology Modeling and Molecular Docking against the Tumor Suppressor p53.	Nguyen C, Nguyen VD.	Biomed Res Int	10.1155/2016/8490482	2016
	The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness.	Liolios K, Schriml L, Hirschman L, Pagani I, Nosrat B, Sterk P, White O, Rocca-Serra P, Sansone SA, Taylor C, Kyrpides NC, Field D.	Stand Genomic Sci	10.4056/sigs.2675953	2012
Phylogeny	A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates.	Liu XL, Liu SL, Liu M, Kong BH, Liu L, Li YH.	Braz J Microbiol	10.1590/s1517-83822014000100022	2014
	Analysis of the mobilization functions of the vancomycin resistance transposon Tn1549, a member of a new family of conjugative elements.	Tsvetkova K, Marvaud JC, Lambert T.	J Bacteriol	10.1128/jb.00680-09	2010
Genetics	Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).	Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC.	Genome Res	10.1101/gr.131482.111	2012
	Design, construction, and in vivo augmentation of a complex gut microbiome.	Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.	Cell	10.1016/j.cell.2022.08.003	2022
Metabolism	Alternative spermidine biosynthetic route is critical for growth of Campylobacter jejuni and is the dominant polyamine pathway in human gut microbiota.	Hanfrey CC, Pearson BM, Hazeldine S, Lee J, Gaskin DJ, Woster PM, Phillips MA, Michael AJ.	J Biol Chem	10.1074/jbc.m111.307835	2011
	Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages.	Samson JE, Moineau S.	Appl Environ Microbiol	10.1128/aem.00796-10	2010
Pathogenicity	Vesiculation from Pseudomonas aeruginosa under SOS.	Maredia R, Devineni N, Lentz P, Dallo SF, Yu J, Guentzel N, Chambers J, Arulanandam B, Haskins WE, Weitao T.	ScientificWorldJournal	10.1100/2012/402919	2012
	The RepA_N replicons of Gram-positive bacteria: a family of broadly distributed but narrow host range plasmids.	Weaver KE, Kwong SM, Firth N, Francia MV.	Plasmid	10.1016/j.plasmid.2008.11.004	2009
Metabolism	ABC transporters involved in export of cell surface glycoconjugates.	Cuthbertson L, Kos V, Whitfield C.	Microbiol Mol Biol Rev	10.1128/mmbr.00009-10	2010
	Multi-omic analyses of the development of obesity-related depression linked to the gut microbe Anaerotruncus colihominis and its metabolite glutamate.	Chang Z, Zhu Y, Wang P, Du L, Wu M, Wang X, Kong C, Huang D, Xie R, Ji G, Wang C, Cheng L, Yan X, Wei Q, Qin H.	Sci Bull (Beijing)	10.1016/j.scib.2025.04.010	2025
Phylogeny	Full-length 16S rRNA sequencing revealed an altered microbiome diversity and composition of the jejunum and cecum in chicken infected with Eimeria necatrix.	Xue N, Feng Q, Zhu Y, Cheng C, Wang F, Liu D, Su S, Xu J, Hu J, Tao J.	Vet Parasitol	10.1016/j.vetpar.2025.110458	2025
	Dysregulation of gut microbiota stimulates NETs-driven HCC intrahepatic metastasis: therapeutic implications of healthy faecal microbiota transplantation.	Deng Z, Mei S, Ouyang Z, Wang R, Wang L, Zou B, Dai J, Mao K, Li Q, Guo Q, Yi C, Meng F, Xie M, Zhang X, Wang R, Deng T, Wang Z, Li X, Wang Q, Liu B, Tian X.	Gut Microbes	10.1080/19490976.2025.2476561	2025
Genetics	Metagenomics Analysis Reveals Unique Gut Microbiota Signature of Slow-Transit Constipation.	Han K, Kuo B, Khalili H, Staller K.	Clin Transl Gastroenterol	10.14309/ctg.0000000000000766	2024
	Plant Heteropolysaccharides as Potential Anti-Diabetic Agents: A Review.	He D, Cui C.	Curr Issues Mol Biol	10.3390/cimb47070533	2025
Genetics	Cognitive Function Associated with Gut Microbial Abundance in Sucrose and S-Adenosyl-L-Methionine (SAMe) Metabolic Pathways.	Jeong S, Huang LK, Tsai MJ, Liao YT, Lin YS, Hu CJ, Hsu YH.	J Alzheimers Dis	10.3233/jad-215090	2022
	The effect of culturing temperature on the growth of the most dominant bacterial species of human gut microbiota and harmful bacterial species.	Shimokawa H, Sakakibara H, Ami Y, Hirano R, Kurihara S.	Biosci Microbiota Food Health	10.12938/bmfh.2024-087	2025
	Akkermansia muciniphila is associated with normal muscle mass and Eggerthella is related with sarcopenia in cirrhosis.	Efremova I, Alieva A, Maslennikov R, Poluektova E, Zharkova M, Kudryavtseva A, Krasnov G, Zharikov Y, Nerestyuk Y, Karchevskaya A, Ivashkin V.	Front Nutr	10.3389/fnut.2024.1438897	2024
	Multiple sclerosis and gut microbiota: Lachnospiraceae from the ileum of MS twins trigger MS-like disease in germfree transgenic mice-An unbiased functional study.	Yoon H, Gerdes LA, Beigel F, Sun Y, Kovilein J, Wang J, Kuhlmann T, Flierl-Hecht A, Haller D, Hohlfeld R, Baranzini SE, Wekerle H, Peters A.	Proc Natl Acad Sci U S A	10.1073/pnas.2419689122	2025
Pathogenicity	Immuno-Microbial Signature of Vaccine-Induced Immunity against SARS-CoV-2.	Umeda L, Torres A, Kunihiro BP, Rubas NC, Wells RK, Phankitnirundorn K, Peres R, Juarez R, Maunakea AK.	Vaccines (Basel)	10.3390/vaccines12060637	2024
	Temporal network analysis of gut microbiota unveils aging trajectories associated with colon cancer.	Chen Z, Zhang Z, Nie BN, Huang W, Zhu Y, Zhang L, Xu M, Wang M, Yuan C, Liu N, Wang X, Tian J, Ba Q, Wang Z.	mSystems	10.1128/msystems.01188-24	2025
	Machine learning prediction of obesity-associated gut microbiota: identifying Bifidobacterium pseudocatenulatum as a potential therapeutic target.	Wu H, Li Y, Jiang Y, Li X, Wang S, Zhao C, Yang X, Chang B, Yang J, Qiao J.	Front Microbiol	10.3389/fmicb.2024.1488656	2024
	Effects of Sodium-Glucose Cotransporter-2 Inhibitors on Modulating Protein-Bound Uremic Toxins and Gut Microbiota in Predialysis CKD Patients: Matched Case-Control Study.	Hsu CK, Chang LC, Chen YT, Chen CY, Hsu HR, Bai S, Lee CC, Lee CC, Jangir H, Sun CY, Su SC, Wu IW.	Kidney360	10.34067/kid.0000000792	2025
	Mining the microbiota to identify gut commensals modulating neuroinflammation in a mouse model of multiple sclerosis.	Bianchimano P, Britton GJ, Wallach DS, Smith EM, Cox LM, Liu S, Iwanowski K, Weiner HL, Faith JJ, Clemente JC, Tankou SK.	Microbiome	10.1186/s40168-022-01364-2	2022
	From Compensation to Collapse: UVB-Driven Disruption of Host-Microbiota Homeostasis Exacerbates Amphibian Ecological Risk.	Yuan Z, Fei J, Li S, Wu Y, Liu P.	Animals (Basel)	10.3390/ani15223236	2025
Phenotype	Stratification of Gut Microbiota Profiling Based on Autism Neuropsychological Assessments.	Marangelo C, Vernocchi P, Del Chierico F, Scanu M, Marsiglia R, Petrolo E, Fuca E, Guerrera S, Valeri G, Vicari S, Putignani L.	Microorganisms	10.3390/microorganisms12102041	2024
	Metabolomics and metagenomics in mice reveal the role of the gut microbiota in tryptophan metabolism.	Leve M, Manghi P, Bredon M, Lefevre A, Manara S, Armanini F, Emond P, Planchais J, Rolhion N, Segata N, Sokol H.	iScience	10.1016/j.isci.2025.113751	2025
Genetics	Diet-Gut Microbiota Relations: Critical Appraisal of Evidence From Studies Using Metagenomics.	Lotankar M, Houttu N, Mokkala K, Laitinen K.	Nutr Rev	10.1093/nutrit/nuae192	2025
	Characterization and Evaluation of Lactobacillus plantarum LC5.2 Isolated from Thai Native Pigs for its Probiotic Potential in Gut Microbiota Modulation and Immune Enhancement.	Khongkool K, Taweechotipatr M, Payungporn S, Sawaswong V, Lertworapreecha M.	J Microbiol Biotechnol	10.4014/jmb.2503.03028	2025
	Advanced Age Worsens Respiratory Function and Pulmonary Inflammation After Burn Injury and This Correlates With Changes in the Fecal Microbiome in Mice.	McMahan RH, Boe D, Giesy LE, Najarro KM, Khair S, Walrath T, Frank DN, Kovacs EJ.	J Burn Care Res	10.1093/jbcr/irae101	2025
Metabolism	Combined metagenomic and metabolomic analyses reveal gut microbiota dysbiosis and metabolic dysfunction in pediatric neurodevelopmental disorders.	Wang Q, Luo Y, Mao C, Xiang X, Chen J.	Front Immunol	10.3389/fimmu.2025.1645137	2025
	Microbiota-Driven Mechanisms in Multiple Sclerosis: Pathogenesis, Therapeutic Strategies, and Biomarker Potential.	Nemati MH, Yazdanpanah E, Kazemi R, Orooji N, Dadfar S, Oksenych V, Haghmorad D.	Biology (Basel)	10.3390/biology14040435	2025
	Gut Microbial Changes Associated With Obesity in Youth With Type 1 Diabetes.	Ismail HM, Perera D, Mandal R, DiMeglio LA, Evans-Molina C, Hannon T, Petrosino J, Javornik Cregeen S, Schmidt NW.	J Clin Endocrinol Metab	10.1210/clinem/dgae529	2025
	A comparative pharmacological study of three Chinese traditional medicines found Blautia to be the key functional bacterium of Coptis chinensis Franch. and Phellodendri chinensis Cortex against colitis.	Zhan J, Cheng J, Yang Y, Xu X, Lu Z, Li L, Li H, Yang Q, Hu Y, Song Y, Fan Q, Yang E, Liang Q, Sun S, Qiu F, Cao Y, Wu C.	Front Pharmacol	10.3389/fphar.2025.1587119	2025
	Functional recovery outcomes following acute stroke is associated with abundance of gut microbiota related to inflammation, butyrate and secondary bile acid.	Hammond TC, Powell E, Green SJ, Chlipala G, Frank J, Yackzan AT, Yanckello LM, Chang YH, Xing X, Heil S, Springer JE, Pennypacker K, Stromberg A, Sawaki L, Lin AL.	Front Rehabil Sci	10.3389/fresc.2022.1017180	2022
	High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice.	Hases L, Stepanauskaite L, Birgersson M, Brusselaers N, Schuppe-Koistinen I, Archer A, Engstrand L, Williams C.	Commun Biol	10.1038/s42003-022-04406-5	2023
	Gut microbiota dysbiosis and metabolic perturbations of bile/glyceric acids in major depressive disorder with IBS comorbidity.	Du J-Y, Zhang Z-J, Tan L, Yang J-Y, Yang R-N, Chen Y-L, Tan G-F, Li J, Li W-J, Yang L, Cai J, Shen D-L, Zhu H-R, Fan Z-X, Yuan M-L, Zhang W.	mBio	10.1128/mbio.02447-25	2025
	Long-term Metformin Alters Gut Microbiota and Serum Metabolome in Coronary Artery Disease Patients After Percutaneous Coronary Intervention to Improve 5-year Prognoses: A Multi-omics Analysis	Zhou R, Wu Q, Qian H, Wang L, Liu G, Zhang B, Wu W, Zhang S.	Rev Cardiovasc Med		2025
Genetics	Gut microbiome signatures in iNPH: Insights from a shotgun metagenomics study.	Park R, Chevalier C, Kieser S, Marizzoni M, Paquis A, Armand S, Scheffler M, Allali G, Assal F, Momjian S, Frisoni GB.	PLoS One	10.1371/journal.pone.0330251	2025
	Gut microbiome composition and metabolic activity in women with diverticulitis.	Ma W, Wang Y, Nguyen LH, Mehta RS, Ha J, Bhosle A, Mclver LJ, Song M, Clish CB, Strate LL, Huttenhower C, Chan AT.	Nat Commun	10.1038/s41467-024-47859-4	2024
	Impact of broad-spectrum antibiotics on the gut-microbiota-spleen-brain axis.	Wan X, Eguchi A, Sakamoto A, Fujita Y, Yang Y, Qu Y, Hatano M, Mori C, Hashimoto K.	Brain Behav Immun Health	10.1016/j.bbih.2022.100573	2023
	Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China.	Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1374544	2024
Metabolism	Insights from metagenomics into gut microbiome associated with acute coronary syndrome therapy.	Guan Y, Zhao S, Li J, Zhang W, Guo Z, Luo Y, Jiang X, Li J, Liu J, Chen X, Zhao Z, Zhang Z.	Front Microbiol	10.3389/fmicb.2024.1369478	2024
	Gut Microbial Signatures of Distinct Trimethylamine N-Oxide Response to Raspberry Consumption.	Franck M, de Toro-Martin J, V Varin T, Garneau V, Pilon G, Roy D, Couture P, Couillard C, Marette A, Vohl MC.	Nutrients	10.3390/nu14081656	2022
	Sodium Butyrate Inhibits Necroptosis by Regulating MLKL via E2F1 in Intestinal Epithelial Cells of Liver Cirrhosis.	Zhou Y, Ding Y, Li Y, Sheng Q, Han C, Fan Y, Wang Z, Lu B, Dou X, Zhang C.	J Clin Transl Hepatol	10.14218/jcth.2024.00221	2025
	Environmental Impact on Differential Composition of Gut Microbiota in Indoor Chickens in Commercial Production and Outdoor, Backyard Chickens.	Seidlerova Z, Kubasova T, Faldynova M, Crhanova M, Karasova D, Babak V, Rychlik I.	Microorganisms	10.3390/microorganisms8050767	2020
Pathogenicity	Blood-borne immune cells carry low biomass DNA remnants of microbes in patients with colorectal cancer or inflammatory bowel disease.	Morsy Y, Walberg A, Wawrzyniak P, Hubeli B, Truscello L, Mamie C, Niechcial A, Gueguen E, Manzini R, Gottier C, Lang S, Scharl S, Blumel S, Biedermann L, Rogler G, Turina M, Ramser M, Petrowsky H, Arnold IC, Zeissig S, Zamboni N, Egli A, Niess JH, Hruz P, Knuth A, Fritsch R, Manz MG, Wawrzyniak M, Scharl M.	Gut Microbes	10.1080/19490976.2025.2530157	2025
	High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation.	Slager J, Simpson HL, Gacesa R, Chen L, Tan IL, Gelderloos J, Maatman A, Wijmenga C, Zhernakova A, Fu J, Weersma RK, Gonera G, Jonkers IH, Withoff S.	Gut Microbes	10.1080/19490976.2025.2489071	2025
	Alterations in lung and gut microbiota reduce diversity in patients with nontuberculous mycobacterial pulmonary disease.	Choi JY, Shim B, Park Y, Kang YA.	Korean J Intern Med	10.3904/kjim.2023.097	2023
	Integrated analysis of the microbiota-gut-brain axis in response to sleep deprivation and diet-induced obesity.	Lee J, Kang J, Kim Y, Lee S, Oh CM, Kim T.	Front Endocrinol (Lausanne)	10.3389/fendo.2023.1117259	2023
	Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients.	Lee JY, Mannaa M, Kim Y, Kim J, Kim GT, Seo YS.	Genes (Basel)	10.3390/genes10100748	2019
	Eggshell and Feed Microbiota Do Not Represent Major Sources of Gut Anaerobes for Chickens in Commercial Production.	Volf J, Crhanova M, Karasova D, Faldynova M, Kubasova T, Seidlerova Z, Sebkova A, Zeman M, Juricova H, Matiasovicova J, Foltyn M, Tvrdon Z, Rychlik I.	Microorganisms	10.3390/microorganisms9071480	2021
Genetics	Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer.	Cumbo F, Truglia S, Weitschek E, Blankenberg D.	Brief Bioinform	10.1093/bib/bbaf177	2025
	Efficacy and safety of Bacteroides fragilis BF839 for pediatric autism spectrum disorder: a randomized clinical trial.	Lin CH, Zeng T, Lu CW, Li DY, Liu YY, Li BM, Chen SQ, Deng YH.	Front Nutr	10.3389/fnut.2024.1447059	2024
	Exploring the regulatory mechanism of intestinal flora based on PD-1 receptor/ligand targeted cancer immunotherapy.	Gao X, Jiang J.	Front Immunol	10.3389/fimmu.2024.1359029	2024
	Multi-omics analysis reveals regime shifts in the gastrointestinal ecosystem in chickens following anticoccidial vaccination and Eimeria tenella challenge.	Liu P-Y, Liaw J, Soutter F, Ortiz JJ, Tomley FM, Werling D, Gundogdu O, Blake DP, Xia D.	mSystems	10.1128/msystems.00947-24	2024
Metabolism	Bacterial and plant HAD enzymes catalyse a missing phosphatase step in thiamin diphosphate biosynthesis.	Hasnain G, Roje S, Sa N, Zallot R, Ziemak MJ, de Crecy-Lagard V, Gregory JF, Hanson AD.	Biochem J	10.1042/bj20150805	2016
	Profile of the Gut Microbiome Containing Carbapenem-Resistant Enterobacteriaceae in ICU Patients.	Sindi AA, Alsayed SM, Abushoshah I, Bokhary DH, Tashkandy NR.	Microorganisms	10.3390/microorganisms10071309	2022
Metabolism	In-depth multiomic characterization of the effects of obesity in high-fat diet-fed mice.	Li B, Chen J, Ou X, Liu X, Xu Z, Xiang X, Yang Y, Wang Q.	FEBS Open Bio	10.1002/2211-5463.13788	2024
Metabolism	Low-dose valine attenuates diet-induced metabolic dysfunction-associated steatotic liver disease (MASLD) in mice by enhancing leptin sensitivity and modulating the gut microbiome.	Felicianna, Lo EKK, Chen C, Ismaiah MJ, Zhang F, Leung HKM, El-Nezami H.	Mol Metab	10.1016/j.molmet.2024.102059	2024
	Gut microbiota diversity and composition in predicting immunotherapy response and immunotherapy-related colitis in melanoma patients: A systematic review.	Oey O, Liu YY, Sunjaya AF, Simadibrata DM, Khattak MA, Gray E.	World J Clin Oncol	10.5306/wjco.v13.i11.929	2022
	Dietary iron intake has long-term effects on the fecal metabolome and microbiome.	Kostenko A, Zuffa S, Zhi H, Mildau K, Raffatellu M, Dorrestein PC, Aron AT.	Metallomics	10.1093/mtomcs/mfae033	2024
Pathogenicity	Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity.	Raju SC, Molinaro A, Awoyemi A, Jorgensen SF, Braadland PR, Nendl A, Seljeflot I, Ueland PM, McCann A, Aukrust P, Vestad B, Mayerhofer C, Broch K, Gullestad L, Lappegard KT, Halvorsen B, Kristiansen K, Hov JR, Troseid M.	Genome Med	10.1186/s13073-024-01296-6	2024
	Gut microbial determinants of clinically important improvement in patients with rheumatoid arthritis.	Gupta VK, Cunningham KY, Hur B, Bakshi U, Huang H, Warrington KJ, Taneja V, Myasoedova E, Davis JM, Sung J.	Genome Med	10.1186/s13073-021-00957-0	2021
Transcriptome	The altered TBI fecal microbiome is stable and functionally distinct.	Pyles RB, Miller AL, Urban RJ, Sheffield-Moore M, Wright TJ, Maxwell CA, Randolph KM, Danesi CP, McGovern KA, Vargas J, Armstrong P, Kreber L, Cumpa G, Randall K, Morrison M, Masel BE.	Front Mol Neurosci	10.3389/fnmol.2024.1341808	2024
	The gut microbiome in end-stage lung disease and lung transplantation.	Zhang S, Swarte JC, Gacesa R, Knobbe TJ, Kremer D, Jansen BH, de Borst MH, TransplantLines Investigators, Harmsen HJM, Erasmus ME, Verschuuren EAM, Bakker SJL, Gan CT, Weersma RK, Bjork JR.	mSystems	10.1128/msystems.01312-23	2024
	Berberine-microbiota interplay: orchestrating gut health through modulation of the gut microbiota and metabolic transformation into bioactive metabolites.	Dehau T, Cherlet M, Croubels S, Van De Vliet M, Goossens E, Van Immerseel F.	Front Pharmacol	10.3389/fphar.2023.1281090	2023
Genetics	Gut microbiota composition and function in pregnancy as determinants of prediabetes at two-year postpartum.	Houttu N, Benchraka C, Lotankar M, Muhli E, Niinikoski H, Lahti L, Laitinen K.	Acta Diabetol	10.1007/s00592-023-02064-5	2023
Pathogenicity	Impact of 2'-Fucosyllactose on Gut Microbiota Composition in Adults with Chronic Gastrointestinal Conditions: Batch Culture Fermentation Model and Pilot Clinical Trial Findings.	Ryan JJ, Monteagudo-Mera A, Contractor N, Gibson GR.	Nutrients	10.3390/nu13030938	2021
Metabolism	Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.	Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.	Microbiol Spectr	10.1128/spectrum.00829-23	2023
	Insights into the Relationship Between the Gut Microbiome and Immune Checkpoint Inhibitors in Solid Tumors.	Ciernikova S, Sevcikova A, Novisedlakova M, Mego M.	Cancers (Basel)	10.3390/cancers16244271	2024
Pathogenicity	The gut microbiome in bullous pemphigoid: implications of the gut-skin axis for disease susceptibility.	Liu X, van Beek N, Cepic A, Andreani NA, Chung CJ, Hermes BM, Yilmaz K, Benoit S, Drenovska K, Gerdes S, Glaser R, Goebeler M, Gunther C, von Georg A, Hammers CM, Holtsche MM, Hubner F, Kiritsi D, Schauer F, Linnenmann B, Huilaja L, Tasanen-Maatta K, Vassileva S, Zillikens D, Sadik CD, Schmidt E, Ibrahim S, Baines JF.	Front Immunol	10.3389/fimmu.2023.1212551	2023
	Impact of Gut Dysbiosis on the Risk of Non-Small-Cell Lung Cancer.	Wei YF, Huang MS, Huang CH, Yeh YT, Hung CH.	Int J Environ Res Public Health	10.3390/ijerph192315991	2022
Phylogeny	Identification of acacia gum fermenting bacteria from pooled human feces using anaerobic enrichment culture.	Rawi MH, Tan HY, Sarbini SR.	Front Microbiol	10.3389/fmicb.2023.1245042	2023
	Sarecycline Demonstrated Reduced Activity Compared to Minocycline against Microbial Species Representing Human Gastrointestinal Microbiota.	Ghannoum MA, Long L, Bunick CG, Del Rosso JQ, Gamal A, Tyring SK, McCormick TS, Grada A.	Antibiotics (Basel)	10.3390/antibiotics11030324	2022
	Gut butyrate-producers confer post-infarction cardiac protection.	Chen HC, Liu YW, Chang KC, Wu YW, Chen YM, Chao YK, You MY, Lundy DJ, Lin CJ, Hsieh ML, Cheng YC, Prajnamitra RP, Lin PJ, Ruan SC, Chen DH, Shih ESC, Chen KW, Chang SS, Chang CMC, Puntney R, Moy AW, Cheng YY, Chien HY, Lee JJ, Wu DC, Hwang MJ, Coonen J, Hacker TA, Yen CE, Rey FE, Kamp TJ, Hsieh PCH.	Nat Commun	10.1038/s41467-023-43167-5	2023
	Multi-kingdom microbial signatures in excess body weight colorectal cancer based on global metagenomic analysis.	Zhu X, Xu P, Zhu R, Gao W, Yin W, Lan P, Zhu L, Jiao N.	Commun Biol	10.1038/s42003-023-05714-0	2024
	The oral administration of Lacticaseibacillus casei Shirota alleviates acetaminophen-induced liver injury through accelerated acetaminophen metabolism via the liver-gut axis in mice.	Lv L, Ren S, Jiang H, Yan R, Chen W, Yan R, Dong J, Shao L, Yu Y.	mSphere	10.1128/msphere.00672-23	2024
	Checkpoint inhibitor responses can be regulated by the gut microbiota - A systematic review.	Zeriouh M, Raskov H, Kvich L, Gogenur I, Bennedsen ALB.	Neoplasia	10.1016/j.neo.2023.100923	2023
	Single-cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a proinflammatory metabolic signature in male mice at late adulthood.	Lim JJ, Goedken M, Jin Y, Gu H, Cui JY.	Toxicol Sci	10.1093/toxsci/kfae047	2024
	Fecal microbiota transplantation and its repercussions in patients with melanoma refractory to anti-PD-1 therapy: scope review.	Barbosa EC, Bucar EEC, Jube GR, Silveira LB, Silva NCD, Faria PCC, Ramos PLC, Moraes VRY, Barros JOB.	Rev Col Bras Cir	10.1590/0100-6991e-20233490-en	2023
	Gut feelings: the relations between depression, anxiety, psychotropic drugs and the gut microbiome.	Brushett S, Gacesa R, Vich Vila A, Brandao Gois MF, Andreu-Sanchez S, Swarte JC, Klaassen MAY, Collij V, Sinha T, Bolte LA, Wu J, Swertz M, de Kroon MLA, Reijneveld SA, Wijmenga C, Weersma RK, Fu J, van Loo HM, Kurilshikov A, Zhernakova A.	Gut Microbes	10.1080/19490976.2023.2281360	2023
Phylogeny	Gut mucosal microbiota profiles linked to colorectal cancer recurrence.	Huo RX, Wang YJ, Hou SB, Wang W, Zhang CZ, Wan XH.	World J Gastroenterol	10.3748/wjg.v28.i18.1946	2022
	The gut microbiota in multiple sclerosis varies with disease activity.	Thirion F, Sellebjerg F, Fan Y, Lyu L, Hansen TH, Pons N, Levenez F, Quinquis B, Stankevic E, Sondergaard HB, Dantoft TM, Poulsen CS, Forslund SK, Vestergaard H, Hansen T, Brix S, Oturai A, Sorensen PS, Ehrlich SD, Pedersen O.	Genome Med	10.1186/s13073-022-01148-1	2023
	Probiotic Escherichia coli Nissle 1917 protect chicks from damage caused by Salmonella enterica serovar Enteritidis colonization.	Wu S, Zhang Q, Cong G, Xiao Y, Shen Y, Zhang S, Zhao W, Shi S.	Anim Nutr	10.1016/j.aninu.2023.06.001	2023
Pathogenicity	Gut microbiota composition is altered in postural orthostatic tachycardia syndrome and post-acute COVID-19 syndrome.	Hamrefors V, Kahn F, Holmqvist M, Carlson K, Varjus R, Gudjonsson A, Fedorowski A, Ohlsson B.	Sci Rep	10.1038/s41598-024-53784-9	2024
	Clinical Significance of Probiotics for Children with Idiopathic Nephrotic Syndrome.	Yamaguchi T, Tsuji S, Akagawa S, Akagawa Y, Kino J, Yamanouchi S, Kimata T, Hashiyada M, Akane A, Kaneko K.	Nutrients	10.3390/nu13020365	2021
Pathogenicity	Dual RNA-seq study of the dynamics of coding and non-coding RNA expression during Clostridioides difficile infection in a mouse model.	Kreis V, Toffano-Nioche C, Deneve-Larrazet C, Marvaud J-C, Garneau JR, Dumont F, van Dijk EL, Jaszczyszyn Y, Boutserin A, D'Angelo F, Gautheret D, Kansau I, Janoir C, Soutourina O.	mSystems	10.1128/msystems.00863-24	2024
	A Survey of Bacterial Microcompartment Distribution in the Human Microbiome.	Asija K, Sutter M, Kerfeld CA.	Front Microbiol	10.3389/fmicb.2021.669024	2021
	A cross-sectional study identifying disparities in serum metabolic profiles among hypertensive patients with ISH, IDH and SDH subtypes.	Shen Y, Wang P, Yang X, Chen M, Dong Y, Li J.	Front Cardiovasc Med	10.3389/fcvm.2023.1102754	2023
	Gallstone Disease and Bacterial Metabolic Performance of Gut Microbiota in Middle-Aged and Older Patients.	Georgescu D, Ionita I, Lascu A, Hut EF, Dragan S, Ancusa OE, Ionita M, Calamar-Popovici D, Georgescu LA, Lighezan DF.	Int J Gen Med	10.2147/ijgm.s350104	2022
	Baseline gut microbiota and metabolome predict durable immunogenicity to SARS-CoV-2 vaccines.	Peng Y, Zhang L, Mok CKP, Ching JYL, Zhao S, Wong MKL, Zhu J, Chen C, Wang S, Yan S, Qin B, Liu Y, Zhang X, Cheung CP, Cheong PK, Ip KL, Fung ACH, Wong KKY, Hui DSC, Chan FKL, Ng SC, Tun HM.	Signal Transduct Target Ther	10.1038/s41392-023-01629-8	2023
	Immunotherapy in Colorectal Cancer: Potential of Fecal Transplant and Microbiota-augmented Clinical Trials.	Park R, Umar S, Kasi A.	Curr Colorectal Cancer Rep	10.1007/s11888-020-00456-1	2020
	Fecal transplantation treatment of antibiotic-induced, noninfectious colitis and long-term microbiota follow-up.	Satokari R, Fuentes S, Mattila E, Jalanka J, de Vos WM, Arkkila P.	Case Rep Med	10.1155/2014/913867	2014
	Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children.	Bonham KS, Fahur Bottino G, McCann SH, Beauchemin J, Weisse E, Barry F, Cano Lorente R, RESONANCE Consortium, Huttenhower C, Bruchhage M, D'Sa V, Deoni S, Klepac-Ceraj V.	Sci Adv	10.1126/sciadv.adi0497	2023
	Gut microbiota: a new player in regulating immune- and chemo-therapy efficacy.	Anfossi S, Calin GA.	Cancer Drug Resist	10.20517/cdr.2020.04	2020
	Prevotella copri alleviates sarcopenia via attenuating muscle mass loss and function decline.	Liu X, Wu J, Tang J, Xu Z, Zhou B, Liu Y, Hu F, Zhang G, Cheng R, Xia X, Chen Y, Wu H, Wang D, Yue J, Dong B, Fu J, Yu H, Dong B.	J Cachexia Sarcopenia Muscle	10.1002/jcsm.13313	2023
	Alterations of fecal antibiotic resistome in COVID-19 patients after empirical antibiotic exposure.	Kang Y, Chen S, Chen Y, Tian L, Wu Q, Zheng M, Li Z.	Int J Hyg Environ Health	10.1016/j.ijheh.2021.113882	2022
	Targeting the Intestinal Microbiota to Prevent Type 2 Diabetes and Enhance the Effect of Metformin on Glycaemia: A Randomised Controlled Pilot Study.	Palacios T, Vitetta L, Coulson S, Madigan CD, Lam YY, Manuel R, Briskey D, Hendy C, Kim JN, Ishoey T, Soto-Giron MJ, Schott EM, Toledo G, Caterson ID.	Nutrients	10.3390/nu12072041	2020
Enzymology	Identification of mucin degraders of the human gut microbiota.	Raimondi S, Musmeci E, Candeliere F, Amaretti A, Rossi M.	Sci Rep	10.1038/s41598-021-90553-4	2021
Genetics	Changes in Gut Microbiota of Patients with Atopic Dermatitis During Balneotherapy.	Thirion F, Guilly S, Fromentin S, Plaza Onate F, Alvarez AS, Le Chatelier E, Pons N, Levenez F, Quinquis B, Ehrlich S, Dore J, Martin R, Seite S.	Clin Cosmet Investig Dermatol	10.2147/ccid.s342104	2022
Genetics	Gut Microbiome Alterations in Patients With Visceral Obesity Based on Quantitative Computed Tomography.	Yan H, Qin Q, Chen J, Yan S, Li T, Gao X, Yang Y, Li A, Ding S.	Front Cell Infect Microbiol	10.3389/fcimb.2021.823262	2021
Phylogeny	Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome.	Nagy-Szakal D, Williams BL, Mishra N, Che X, Lee B, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Ramanan D, Jain K, Eddy ML, Hornig M, Lipkin WI.	Microbiome	10.1186/s40168-017-0261-y	2017
	Stochastic block models reveal a robust nested pattern in healthy human gut microbiomes.	Cobo-Lopez S, Gupta VK, Sung J, Guimera R, Sales-Pardo M.	PNAS Nexus	10.1093/pnasnexus/pgac055	2022
Genetics	Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures.	Medvecky M, Cejkova D, Polansky O, Karasova D, Kubasova T, Cizek A, Rychlik I.	BMC Genomics	10.1186/s12864-018-4959-4	2018
Phylogeny	The Compromised Mucosal Immune System of beta7 Integrin-Deficient Mice Has Only Minor Effects on the Fecal Microbiota in Homeostasis.	Babbar A, Hitch TCA, Pabst O, Clavel T, Hubel J, Eswaran S, Wagner N, Schippers A.	Front Microbiol	10.3389/fmicb.2019.02284	2019
Pathogenicity	The development of probiotics and prebiotics therapy to ulcerative colitis: a therapy that has gained considerable momentum.	Guo J, Li L, Cai Y, Kang Y.	Cell Commun Signal	10.1186/s12964-024-01611-z	2024
Pathogenicity	Associations of dietary diversity with the gut microbiome, fecal metabolites, and host metabolism: results from 2 prospective Chinese cohorts.	Xiao C, Wang JT, Su C, Miao Z, Tang J, Ouyang Y, Yan Y, Jiang Z, Fu Y, Shuai M, Gou W, Xu F, Yu EY, Liang Y, Liang X, Tian Y, Wang J, Huang F, Zhang B, Wang H, Chen YM, Zheng JS.	Am J Clin Nutr	10.1093/ajcn/nqac178	2022
Metabolism	Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude.	Han Y, Liu X, Jia Q, Xu J, Shi J, Li X, Xie G, Zhao X, He K.	Microbiome	10.1186/s40168-024-01781-5	2024
	Effect of dietary supplementation with Lactobacillus acidophilus D2/CSL (CECT 4529) on caecum microbioma and productive performance in broiler chickens.	De Cesare A, Sirri F, Manfreda G, Moniaci P, Giardini A, Zampiga M, Meluzzi A.	PLoS One	10.1371/journal.pone.0176309	2017
Phylogeny	An insight into intestinal mucosal microbiota disruption after stroke.	Stanley D, Moore RJ, Wong CHY.	Sci Rep	10.1038/s41598-017-18904-8	2018
	Zunyimycin C enhances immunity and improves cognitive impairment and its mechanism.	Wang X, Li Z, Sun R, Li X, Guo R, Cui X, Liu B, Li W, Yang Y, Huang X, Qu H, Liu C, Wang Z, Lu Y, Yue C.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1081243	2022
	Gut microbiota as the key controllers of "healthy" aging of elderly people.	Ragonnaud E, Biragyn A.	Immun Ageing	10.1186/s12979-020-00213-w	2021
	Antibiotic Exposure Aggravates Bacteroides-Linked Uremic Toxicity in the Gut-Kidney Axis.	Ray N, Jeong H, Kwon D, Kim J, Moon Y.	Front Immunol	10.3389/fimmu.2022.737536	2022
	Modulatory effects of gut microbiome in cancer immunotherapy: A novel paradigm for blockade of immune checkpoint inhibitors.	Rezasoltani S, Yadegar A, Asadzadeh Aghdaei H, Reza Zali M.	Cancer Med	10.1002/cam4.3694	2021
Pathogenicity	Gut inflammation and dysbiosis in human motor neuron disease.	Rowin J, Xia Y, Jung B, Sun J.	Physiol Rep	10.14814/phy2.13443	2017
	High-throughput Sequencing-based Analysis of the Intestinal Microbiota of Broiler Chickens Fed Genetically Modified Rice Expressing Cry1Ac/Cry1Ab Chimeric Bacillus thuringiensis Protein.	Lili G, Deng X, Minhong Z, Changlong S, Jinghai F, Fuping S, Fan L, Jie Z.	J Poult Sci	10.2141/jpsa.0170029	2018
	PM2RA: A Framework for Detecting and Quantifying Relationship Alterations in Microbial Community.	Liu Z, Mi K, Xu ZZ, Zhang Q, Liu X.	Genomics Proteomics Bioinformatics	10.1016/j.gpb.2020.07.005	2021
	The gut microbiome and response to immune checkpoint inhibitors: preclinical and clinical strategies.	Gong J, Chehrazi-Raffle A, Placencio-Hickok V, Guan M, Hendifar A, Salgia R.	Clin Transl Med	10.1186/s40169-019-0225-x	2019
Pathogenicity	Eukaryotic and Prokaryotic Microbiota Interactions.	Kodio A, Menu E, Ranque S.	Microorganisms	10.3390/microorganisms8122018	2020
Pathogenicity	Eubacterium rectale Attenuates HSV-1 Induced Systemic Inflammation in Mice by Inhibiting CD83.	Islam SMS, Ryu HM, Sayeed HM, Byun HO, Jung JY, Kim HA, Suh CH, Sohn S.	Front Immunol	10.3389/fimmu.2021.712312	2021
Genetics	Metagenome-wide association study of the alterations in the intestinal microbiome composition of ankylosing spondylitis patients and the effect of traditional and herbal treatment.	Huang R, Li F, Zhou Y, Zeng Z, He X, Fang L, Pan F, Chen Y, Lin J, Li J, Qiu D, Tian Y, Tan X, Song Y, Xu Y, Lai Y, Yi H, Gao Q, Fang X, Shi M, Zhou C, Huang J, He YT.	J Med Microbiol	10.1099/jmm.0.001107	2020
Metabolism	Microbial Community Evolution Is Significantly Impacted by the Use of Calcium Isosaccharinic Acid as an Analogue for the Products of Alkaline Cellulose Degradation.	Kyeremeh IA, Charles CJ, Rout SP, Laws AP, Humphreys PN.	PLoS One	10.1371/journal.pone.0165832	2016
	Microbiome in Cancer Development and Treatment.	Ciernikova S, Sevcikova A, Mladosievicova B, Mego M.	Microorganisms	10.3390/microorganisms12010024	2023
Phylogeny	Imaging the in vivo growth patterns of bacteria in human gut Microbiota.	Lin L, Song J, Li J, Zuo X, Wei H, Yang C, Wang W.	Gut Microbes	10.1080/19490976.2021.1960134	2021
	Candida expansion in the gut of lung cancer patients associates with an ecological signature that supports growth under dysbiotic conditions.	Seelbinder B, Lohinai Z, Vazquez-Uribe R, Brunke S, Chen X, Mirhakkak M, Lopez-Escalera S, Dome B, Megyesfalvi Z, Berta J, Galffy G, Dulka E, Wellejus A, Weiss GJ, Bauer M, Hube B, Sommer MOA, Panagiotou G.	Nat Commun	10.1038/s41467-023-38058-8	2023
	An online atlas of human plasma metabolite signatures of gut microbiome composition.	Dekkers KF, Sayols-Baixeras S, Baldanzi G, Nowak C, Hammar U, Nguyen D, Varotsis G, Brunkwall L, Nielsen N, Eklund AC, Bak Holm J, Nielsen HB, Ottosson F, Lin YT, Ahmad S, Lind L, Sundstrom J, Engstrom G, Smith JG, Arnlov J, Orho-Melander M, Fall T.	Nat Commun	10.1038/s41467-022-33050-0	2022
	Cigarette smoking status alters dysbiotic gut microbes in hypertensive patients.	Wang P, Dong Y, Jiao J, Zuo K, Han C, Zhao L, Ding S, Yang X, Chen M, Li J.	J Clin Hypertens (Greenwich)	10.1111/jch.14298	2021
Genetics	A metagenome-wide association study of gut microbiome and visceral fat accumulation.	Nie X, Chen J, Ma X, Ni Y, Shen Y, Yu H, Panagiotou G, Bao Y.	Comput Struct Biotechnol J	10.1016/j.csbj.2020.09.026	2020
Phylogeny	Effect of Lactobacillus acidophilus D2/CSL (CECT 4529) supplementation in drinking water on chicken crop and caeca microbiome.	De Cesare A, Sala C, Castellani G, Astolfi A, Indio V, Giardini A, Manfreda G.	PLoS One	10.1371/journal.pone.0228338	2020
Pathogenicity	Development of an Index Score for Intestinal Inflammation-Associated Dysbiosis Using Real-World Stool Test Results.	Chen L, Reynolds C, David R, Peace Brewer A.	Dig Dis Sci	10.1007/s10620-019-05828-8	2020
Pathogenicity	B Cells and Microbiota in Autoimmunity.	Botia-Sanchez M, Alarcon-Riquelme ME, Galicia G.	Int J Mol Sci	10.3390/ijms22094846	2021
	Protective Effect of Lactobacillus plantarum P8 on Growth Performance, Intestinal Health, and Microbiota in Eimeria-Infected Broilers.	Wang Y, Lv X, Li X, Zhao J, Zhang K, Hao X, Liu K, Liu H.	Front Microbiol	10.3389/fmicb.2021.705758	2021
	Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis.	Perez-Munoz ME, Bergstrom K, Peng V, Schmaltz R, Jimenez-Cardona R, Marsteller N, McGee S, Clavel T, Ley R, Fu J, Xia L, Peterson DA.	Gut Microbes	10.4161/gmic.28622	2014
Pathogenicity	DMARDs-Gut Microbiota Feedback: Implications in the Response to Therapy.	Zaragoza-Garcia O, Castro-Alarcon N, Perez-Rubio G, Guzman-Guzman IP.	Biomolecules	10.3390/biom10111479	2020
Phylogeny	Bacteraemia caused by Anaerotruncus colihominis and emended description of the species.	Lau SK, Woo PC, Woo GK, Fung AM, Ngan AH, Song Y, Liu C, Summanen P, Finegold SM, Yuen K.	J Clin Pathol	10.1136/jcp.2005.031773	2006
	Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism.	Vatanen T, Jabbar KS, Ruohtula T, Honkanen J, Avila-Pacheco J, Siljander H, Strazar M, Oikarinen S, Hyoty H, Ilonen J, Mitchell CM, Yassour M, Virtanen SM, Clish CB, Plichta DR, Vlamakis H, Knip M, Xavier RJ.	Cell	10.1016/j.cell.2022.11.023	2022
Metabolism	Gut Microbiota as Diagnostic Tools for Mirroring Disease Progression and Circulating Nephrotoxin Levels in Chronic Kidney Disease: Discovery and Validation Study.	Wu IW, Lin CY, Chang LC, Lee CC, Chiu CY, Hsu HJ, Sun CY, Chen YC, Kuo YL, Yang CW, Gao SS, Hsieh WP, Chung WH, Lai HC, Su SC.	Int J Biol Sci	10.7150/ijbs.37421	2020
Genetics	Bacterial community structure alterations within the colorectal cancer gut microbiome.	Loftus M, Hassouneh SA, Yooseph S.	BMC Microbiol	10.1186/s12866-021-02153-x	2021
Pathogenicity	Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both Sexes.	Silamikele L, Silamikelis I, Ustinova M, Kalnina Z, Elbere I, Petrovska R, Kalnina I, Klovins J.	Front Endocrinol (Lausanne)	10.3389/fendo.2021.626359	2021
	Understanding the Role of the Gut Microbiome and Microbial Metabolites in Non-Alcoholic Fatty Liver Disease: Current Evidence and Perspectives.	Vallianou N, Christodoulatos GS, Karampela I, Tsilingiris D, Magkos F, Stratigou T, Kounatidis D, Dalamaga M.	Biomolecules	10.3390/biom12010056	2021
Genetics	Disorganized Gut Microbiome Contributed to Liver Cirrhosis Progression: A Meta-Omics-Based Study.	Shao L, Ling Z, Chen D, Liu Y, Yang F, Li L.	Front Microbiol	10.3389/fmicb.2018.03166	2018
	Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals.	Tarallo S, Ferrero G, De Filippis F, Francavilla A, Pasolli E, Panero V, Cordero F, Segata N, Grioni S, Pensa RG, Pardini B, Ercolini D, Naccarati A.	Gut	10.1136/gutjnl-2021-325168	2022
Metabolism	Xenometabolite signatures in the UC Davis type 2 diabetes mellitus rat model revealed using a metabolomics platform enriched with microbe-derived metabolites.	Mercer KE, Yeruva L, Pack L, Graham JL, Stanhope KL, Chintapalli SV, Wankhade UD, Shankar K, Havel PJ, Adams SH, Piccolo BD.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00105.2020	2020
	Next-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile.	Hirano R, Sakanaka M, Yoshimi K, Sugimoto N, Eguchi S, Yamauchi Y, Nara M, Maeda S, Ami Y, Gotoh A, Katayama T, Iida N, Kato T, Ohno H, Fukiya S, Yokota A, Nishimoto M, Kitaoka M, Nakai H, Kurihara S.	Gut Microbes	10.1080/19490976.2021.1973835	2021
	Gut Microbiota as Potential Biomarker and/or Therapeutic Target to Improve the Management of Cancer: Focus on Colibactin-Producing Escherichia coli in Colorectal Cancer.	Veziant J, Villeger R, Barnich N, Bonnet M.	Cancers (Basel)	10.3390/cancers13092215	2021
	Shifts in the Gut Microbiota Composition Due to Depleted Bone Marrow Beta Adrenergic Signaling Are Associated with Suppressed Inflammatory Transcriptional Networks in the Mouse Colon.	Yang T, Ahmari N, Schmidt JT, Redler T, Arocha R, Pacholec K, Magee KL, Malphurs W, Owen JL, Krane GA, Li E, Wang GP, Vickroy TW, Raizada MK, Martyniuk CJ, Zubcevic J.	Front Physiol	10.3389/fphys.2017.00220	2017
	Peeling back the many layers of competitive exclusion.	Maurer JJ, Cheng Y, Pedroso A, Thompson KK, Akter S, Kwan T, Morota G, Kinstler S, Porwollik S, McClelland M, Escalante-Semerena JC, Lee MD.	Front Microbiol	10.3389/fmicb.2024.1342887	2024
Pathogenicity	TLR4 May Be Involved in the Regulation of Colonic Mucosal Microbiota by Vitamin A.	Xiao L, Chen B, Feng D, Yang T, Li T, Chen J.	Front Microbiol	10.3389/fmicb.2019.00268	2019
	The oral microbiome and oral and upper gastrointestinal diseases.	Liu S, Wang S, Zhang N, Li P.	J Oral Microbiol	10.1080/20002297.2024.2355823	2024
Metabolism	Microbiome and ischemic stroke: A systematic review.	Lee YT, Mohd Ismail NI, Wei LK.	PLoS One	10.1371/journal.pone.0245038	2021
	Influence of Leptin and Adiponectin Supplementation on Intraepithelial Lymphocyte and Microbiota Composition in Suckling Rats.	Grases-Pinto B, Abril-Gil M, Castell M, Rodriguez-Lagunas MJ, Burleigh S, Fak Hallenius F, Prykhodko O, Perez-Cano FJ, Franch A.	Front Immunol	10.3389/fimmu.2019.02369	2019
Pathogenicity	Probiotic Lactobacillus plantarum Promotes Intestinal Barrier Function by Strengthening the Epithelium and Modulating Gut Microbiota.	Wang J, Ji H, Wang S, Liu H, Zhang W, Zhang D, Wang Y.	Front Microbiol	10.3389/fmicb.2018.01953	2018
Pathogenicity	Dietary butyrate glycerides modulate intestinal microbiota composition and serum metabolites in broilers.	Yang X, Yin F, Yang Y, Lepp D, Yu H, Ruan Z, Yang C, Yin Y, Hou Y, Leeson S, Gong J.	Sci Rep	10.1038/s41598-018-22565-6	2018
Metabolism	Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes.	Rodrigues RR, Gurung M, Li Z, Garcia-Jaramillo M, Greer R, Gaulke C, Bauchinger F, You H, Pederson JW, Vasquez-Perez S, White KD, Frink B, Philmus B, Jump DB, Trinchieri G, Berry D, Sharpton TJ, Dzutsev A, Morgun A, Shulzhenko N.	Nat Commun	10.1038/s41467-020-20313-x	2021
Metabolism	16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics.	Peterson CT, Sharma V, Iablokov SN, Albayrak L, Khanipov K, Uchitel S, Chopra D, Mills PJ, Fofanov Y, Rodionov DA, Peterson SN.	PLoS One	10.1371/journal.pone.0213869	2019
Metabolism	Paneth cell alpha-defensin misfolding correlates with dysbiosis and ileitis in Crohn's disease model mice.	Shimizu Y, Nakamura K, Yoshii A, Yokoi Y, Kikuchi M, Shinozaki R, Nakamura S, Ohira S, Sugimoto R, Ayabe T.	Life Sci Alliance	10.26508/lsa.201900592	2020
	A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog.	Borderes M, Gasc C, Prestat E, Galvao Ferrarini M, Vinga S, Boucinha L, Sagot MF.	NAR Genom Bioinform	10.1093/nargab/lqab009	2021
Metabolism	Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.	Wirth R, Kovacs E, Maroti G, Bagi Z, Rakhely G, Kovacs KL.	Biotechnol Biofuels	10.1186/1754-6834-5-41	2012
Genetics	Baseline human gut microbiota profile in healthy people and standard reporting template.	King CH, Desai H, Sylvetsky AC, LoTempio J, Ayanyan S, Carrie J, Crandall KA, Fochtman BC, Gasparyan L, Gulzar N, Howell P, Issa N, Krampis K, Mishra L, Morizono H, Pisegna JR, Rao S, Ren Y, Simonyan V, Smith K, VedBrat S, Yao MD, Mazumder R.	PLoS One	10.1371/journal.pone.0206484	2019
Metabolism	Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia.	Vital M, Gao J, Rizzo M, Harrison T, Tiedje JM.	ISME J	10.1038/ismej.2014.179	2015
	Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle.	Reti KL, Thomas MC, Yanke LJ, Selinger LB, Inglis GD.	Gut Pathog	10.1186/1757-4749-5-8	2013
Metabolism	Interactions between Roseburia intestinalis and diet modulate atherogenesis in a murine model.	Kasahara K, Krautkramer KA, Org E, Romano KA, Kerby RL, Vivas EI, Mehrabian M, Denu JM, Backhed F, Lusis AJ, Rey FE.	Nat Microbiol	10.1038/s41564-018-0272-x	2018
	IspH-RPS1 and IspH-UbiA: "Rosetta Stone" Proteins.	Rao G, O'Dowd B, Li J, Wang K, Oldfield E.	Chem Sci	10.1039/c5sc02600h	2015
Phylogeny	Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth.	Lu D, Tiezzi F, Schillebeeckx C, McNulty NP, Schwab C, Shull C, Maltecca C.	Microbiome	10.1186/s40168-017-0384-1	2018
Genetics	Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians.	Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E, Nikkila J, Monti D, Satokari R, Franceschi C, Brigidi P, De Vos W.	PLoS One	10.1371/journal.pone.0010667	2010
Metabolism	Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet.	Walker A, Pfitzner B, Neschen S, Kahle M, Harir M, Lucio M, Moritz F, Tziotis D, Witting M, Rothballer M, Engel M, Schmid M, Endesfelder D, Klingenspor M, Rattei T, Castell WZ, de Angelis MH, Hartmann A, Schmitt-Kopplin P.	ISME J	10.1038/ismej.2014.79	2014
Enzymology	Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model.	Van den Abbeele P, Belzer C, Goossens M, Kleerebezem M, De Vos WM, Thas O, De Weirdt R, Kerckhof FM, Van de Wiele T.	ISME J	10.1038/ismej.2012.158	2013
Metabolism	Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles, and gastrointestinal complaints.	Mack I, Cuntz U, Gramer C, Niedermaier S, Pohl C, Schwiertz A, Zimmermann K, Zipfel S, Enck P, Penders J.	Sci Rep	10.1038/srep26752	2016
Phylogeny	Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms.	Jalanka-Tuovinen J, Salonen A, Nikkila J, Immonen O, Kekkonen R, Lahti L, Palva A, de Vos WM.	PLoS One	10.1371/journal.pone.0023035	2011
Genetics	Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.	Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S, Jones C, Knight R, Walters WA, Knights D, Mongodin EF, Horenstein RB, Mitchell BD, Steinle N, Snitker S, Shuldiner AR, Fraser CM.	PLoS One	10.1371/journal.pone.0043052	2012
	Interactions between Gut Microbiota, Host Genetics and Diet Modulate the Predisposition to Obesity and Metabolic Syndrome.	Ussar S, Griffin NW, Bezy O, Fujisaka S, Vienberg S, Softic S, Deng L, Bry L, Gordon JI, Kahn CR.	Cell Metab	10.1016/j.cmet.2015.07.007	2015
Pathogenicity	Perturbation dynamics of the rumen microbiota in response to exogenous butyrate.	Li RW, Wu S, Baldwin RL, Li W, Li C.	PLoS One	10.1371/journal.pone.0029392	2012
Pathogenicity	Ganoderma lucidum reduces obesity in mice by modulating the composition of the gut microbiota.	Chang CJ, Lin CS, Lu CC, Martel J, Ko YF, Ojcius DM, Tseng SF, Wu TR, Chen YY, Young JD, Lai HC.	Nat Commun	10.1038/ncomms8489	2015
Metabolism	Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent.	Crost EH, Tailford LE, Le Gall G, Fons M, Henrissat B, Juge N.	PLoS One	10.1371/journal.pone.0076341	2013
	CD4CD8alphaalpha lymphocytes, a novel human regulatory T cell subset induced by colonic bacteria and deficient in patients with inflammatory bowel disease.	Sarrabayrouse G, Bossard C, Chauvin JM, Jarry A, Meurette G, Quevrain E, Bridonneau C, Preisser L, Asehnoune K, Labarriere N, Altare F, Sokol H, Jotereau F.	PLoS Biol	10.1371/journal.pbio.1001833	2014
Metabolism	Insights into the evolution of sialic acid catabolism among bacteria.	Almagro-Moreno S, Boyd EF.	BMC Evol Biol	10.1186/1471-2148-9-118	2009
	Heterologous Expression and Characterization of Cellouronate (beta-1,4-Glucuronan) Lyase from a Human Intestinal Bacterium Bacteroides luhongzhouii.	Tanaka Y, Matsumura K, Ariga M, Konno N, Ogata M, Habu N.	J Appl Glycosci (1999)	10.5458/jag.7203102	2025
	Clostridium butyricum-altered lung microbiome is associated with enhanced anti-influenza effects via G-protein-coupled receptor120.	Hagihara M, Yamashita M, Ariyoshi T, Minemura A, Yoshida C, Higashi S, Oka K, Takahashi M, Ota A, Maenaka A, Iwasaki K, Hirai J, Shibata Y, Umemura T, Mori T, Kato H, Asai N, Mikamo H.	iScience	10.1016/j.isci.2025.113502	2025
	Development of culture methods capable of culturing a wide range of predominant species of intestinal bacteria.	Hirano R, Nishita I, Nakai R, Bito A, Sasabe R, Kurihara S.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1056866	2023
	Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.	Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.	Eng Microbiol	10.1016/j.engmic.2024.100147	2024
	Cornuside Alleviates Diabetes Mellitus-Induced Testicular Damage by Modulating the Gut Microbiota.	Liu L, Shu A, Zhu Y, Chen Y	Evid Based Complement Alternat Med	10.1155/2021/5301942	2021
Pathogenicity	Sodium Butyrate Attenuated Diabetes-Induced Intestinal Inflammation by Modulating Gut Microbiota.	Liu L, Chen Y, Wu Q, Shu A, Sun J	Evid Based Complement Alternat Med	10.1155/2022/4646245	2022
Genetics	'Urmitella timonensis' gen. nov., sp. nov., 'Blautia marasmi' sp. nov., 'Lachnoclostridium pacaense' sp. nov., 'Bacillus marasmi' sp. nov. and 'Anaerotruncus rubiinfantis' sp. nov., isolated from stool samples of undernourished African children.	Pham TP, Cadoret F, Alou MT, Brah S, Diallo BA, Diallo A, Sokhna C, Delerce J, Fournier PE, Million M, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2017.02.004	2017
	'Marasmitruncus massiliensis' gen. nov., sp. nov., 'Clostridium culturomicum' sp. nov., 'Blautia provencensis' sp. nov., 'Bacillus caccae' sp. nov. and 'Ornithinibacillus massiliensis' sp. nov., isolated from stool samples of undernourished African children.	Pham TP, Cadoret F, Tidjani Alou M, Brah S, Ali Diallo B, Diallo A, Sokhna C, Delerce J, Fournier PE, Million M, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2017.05.005	2017
Phylogeny	Paludicola psychrotolerans gen. nov., sp. nov., a novel psychrotolerant chitinolytic anaerobe of the family Ruminococcaceae.	Li Y, Zhang LL, Liu L, Tian YQ, Liu XF, Li WJ, Dai YM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002260	2017
Phylogeny	Harryflintia acetispora gen. nov., sp. nov., isolated from chicken caecum.	Petzoldt D, Breves G, Rautenschlein S, Taras D	Int J Syst Evol Microbiol	10.1099/ijsem.0.001317	2016
Phylogeny	Anaerotruncus colihominis gen. nov., sp. nov., from human faeces.	Lawson PA, Song Y, Liu C, Molitoris DR, Vaisanen ML, Collins MD, Finegold SM	Int J Syst Evol Microbiol	10.1099/ijs.0.02653-0	2004
Phylogeny	Anaerotruncus massiliensis sp. nov., a succinate-producing bacterium isolated from human stool from an obese patient after bariatric surgery.	Togo AH, Diop A, Dubourg G, Khelaifia S, Richez M, Armstrong N, Maraninchi M, Fournier PE, Raoult D, Million M	New Microbes New Infect	10.1016/j.nmni.2019.01.004	2019
Phylogeny	Draft genomes and descriptions of Urmitella timonensis gen. nov., sp. nov. and Marasmitruncus massiliensis gen. nov., sp. nov., isolated from severely malnourished African children using culturomics.	Bellali S, Haddad G, Pham TP, Iwaza R, Ibrahim A, Armstrong N, Fadlane A, Couderc C, Diallo A, Sokhna C, Million M, Raoult D, Tidjani Alou M	Antonie Van Leeuwenhoek	10.1007/s10482-022-01777-x	2022

References

#6848	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17241
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26285	IJSEM 413 2004 ( DOI 10.1099/ijs.0.02653-0 , PubMed 15023953 )
#29914	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26285
#33163	; Curators of the CIP;
#56619	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45055
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118701	Collection of Institut Pasteur ; Curators of the CIP; CIP 107754
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerotruncus colihominis (DSM 17241, CCUG 45055, CIP 107754)

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