Name: Granulosicoccus coccoides Z271
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17666

Type strain:

Species: Granulosicoccus coccoides

Strain Designation: Z271

Culture col. no.: DSM 25245, CIP 109923, KMM 6014

Strain history: CIP <- 2008, E. Ivanova, Swinbure Univ., Victoria, Australia: strain Z271

NCBI tax ID(s): 588604 (species)

SI-ID 369427

CIP 109923

Section

Granulosicoccus coccoides Z271 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from surface of leaves of seagrass Zostera marina.

coccus-shaped
Gram-negative
motile
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Granulosicoccaceae*
	Genus	*Granulosicoccus*
	Species	**Granulosicoccus coccoides**
	Full Scientific Name (LPSN)	Granulosicoccus coccoides Kurilenko et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29457]	Gram stain	negative
[Ref.: #118321]	Gram stain	negative

[Ref.: #29457]	Cell width	1 µm

[Ref.: #29457]	Cell shape	coccus-shaped
[Ref.: #118321]	Cell shape	coccus-shaped

[Ref.: #29457]	Motility	yes
[Ref.: #118321]	Motility	yes

[Ref.: #29457]

Pigment production

Multimedia content

[Ref.: #17957]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17957]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17957]

Culture medium growth

[Ref.: #17957]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17957]

Culture medium composition

expand / minimize

[Ref.: #37870]

Culture medium

Marine agar (MA)

[Ref.: #37870]

Culture medium growth

[Ref.: #37870]

Culture medium composition

expand / minimize

[Ref.: #118321]

Culture medium

CIP Medium 13

[Ref.: #118321]

Culture medium growth

[Ref.: #118321]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17957]	growth	25 °C
[Ref.: #29457]	growth	05-28 °C
[Ref.: #37870]	growth	25 °C

[Ref.: #17957]	Temperature range	mesophilic
[Ref.: #37870]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29457]			optimum	7.75
[Ref.: #29457]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29457]	Oxygen tolerance	aerobe
[Ref.: #118321]	Oxygen tolerance	facultative anaerobe

[Ref.: #29457]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29457]		NaCl		growth	0.5-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29457]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #29457]	acetate ChEBI	+	carbon source
[Ref.: #29457]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #29457]	arabinose ChEBI	+	carbon source
[Ref.: #29457]	cellobiose ChEBI	+	carbon source
[Ref.: #29457]	dextrin ChEBI	+	carbon source
[Ref.: #29457]	fructose ChEBI	+	carbon source
[Ref.: #29457]	fucose ChEBI	+	carbon source
[Ref.: #29457]	galactose ChEBI	+	carbon source
[Ref.: #29457]	galacturonate ChEBI	+	carbon source
[Ref.: #29457]	gluconate ChEBI	+	carbon source
[Ref.: #29457]	glucose ChEBI	+	carbon source
[Ref.: #29457]	glycogen ChEBI	+	carbon source
[Ref.: #29457]	inosine ChEBI	+	carbon source
[Ref.: #29457]	L-arabitol ChEBI	+	carbon source
[Ref.: #29457]	lactate ChEBI	+	carbon source
[Ref.: #29457]	lactose ChEBI	+	carbon source
[Ref.: #29457]	maltose ChEBI	+	carbon source
[Ref.: #29457]	mannitol ChEBI	+	carbon source
[Ref.: #29457]	mannose ChEBI	+	carbon source
[Ref.: #29457]	myo-inositol ChEBI	+	carbon source
[Ref.: #29457]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #118321]	nitrate ChEBI	+	reduction
[Ref.: #118321]	nitrite ChEBI	-	reduction
[Ref.: #29457]	propionate ChEBI	+	carbon source
[Ref.: #29457]	pyruvate ChEBI	+	carbon source
[Ref.: #29457]	ribose ChEBI	+	carbon source
[Ref.: #29457]	serine ChEBI	+	carbon source
[Ref.: #29457]	succinate ChEBI	+	carbon source
[Ref.: #29457]	sucrose ChEBI	+	carbon source
[Ref.: #29457]	tween 40 ChEBI	+	carbon source
[Ref.: #29457]	tween 80 ChEBI	+	carbon source
[Ref.: #29457]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118321]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29457]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29457]	catalase	+	1.11.1.6
[Ref.: #118321]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29457]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #29457]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118321]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118321]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118321]	12222	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17957]	Sample type/isolated from	surface of leaves of seagrass Zostera marina
[Ref.: #17957]	Host species	Zostera marina
[Ref.: #17957]	Geographic location (country and/or sea, region)	Sea of Japan, Troitza Bay

[Ref.: #118321]	Sample type/isolated from	Environment, Sea water
[Ref.: #118321]	Geographic location (country and/or sea, region)	Troitsa bay, Sea of Japan
[Ref.: #118321]	Country	Russian Federation
[Ref.: #118321]	Country ISO 3 Code	RUS
[Ref.: #118321]	Continent	Europe
[Ref.: #118321]	Isolation date	1998
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17957]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118321]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17957]	Granulosicoccus coccoides strain Z 271 16S ribosomal RNA gene, partial sequence	FJ535355	1533	ENA	588604 tax ID

[Ref.: #17957]

GC-content

60.2 mol%

Availability in culture collections External links

[Ref.: #17957]

Culture collection no.

DSM 25245, CIP 109923, KMM 6014

[Ref.: #86657]

SI-ID 369427

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Granulosicoccus coccoides sp. nov., isolated from leaves of seagrass (Zostera marina).	Kurilenko VV, Christen R, Zhukova NV, Kalinovskaya NI, Mikhailov VV, Crawford RJ, Ivanova EP	Int J Syst Evol Microbiol	10.1099/ijs.0.013516-0	2009	*

References

#17957

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25245

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29457

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25861 (see below)

#37870 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#86657

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369427.1 )

#118321 Collection of Institut Pasteur ; Curators of the CIP; CIP 109923

#25861

IJSEM 972 2010 ( DOI 10.1099/ijs.0.013516-0 , PubMed 19661498 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Granulosicoccus coccoides in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF