Name: Methermicoccus shengliensis ZC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17657

Type strain:

Species: Methermicoccus shengliensis

Strain Designation: ZC-1

Culture col. no.: DSM 18856, CGMCC 1.5056

Strain history: <- L. Cheng and H. Zhang, Biogas Inst. of Ministry of Agriculture, Chengdu, P.R. China; ZC-1 {2006} <- L. Cheng {2005}

NCBI tax ID(s): 1122233 (strain), 660064 (species)

SI-ID 406207

DSM 18856

Section

Methermicoccus shengliensis ZC-1 is an anaerobe, thermophilic archaeon that was isolated from oil-production water.

anaerobe
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methermicoccaceae*
	Genus	*Methermicoccus*
	Species	**Methermicoccus shengliensis**
	Full Scientific Name (LPSN)	Methermicoccus shengliensis Cheng et al. 2007

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7746]

Culture medium

METHERMICOCCUS (METHANOGEN) MEDIUM (DSMZ Medium 1084)

[Ref.: #7746]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #7746]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7746]			growth	65 °C

[Ref.: #7746]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7746]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7746]	Sample type/isolated from	oil-production water
[Ref.: #7746]	Geographic location (country and/or sea, region)	Shengli oilfield
[Ref.: #7746]	Country	China
[Ref.: #7746]	Country ISO 3 Code	CHN
[Ref.: #7746]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ787474 (>99% sequence identity) for Methermicoccus shengliensis subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	2
Animal Samples
Plant Samples	1
Total Samples	65

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7746]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7746]	Methermicoccus shengliensis strain ZC-1 16S ribosomal RNA gene, partial sequence	DQ787474	1346	ENA	660064 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methermicoccus shengliensis DSM 18856	GCA_000711905	scaffold	GenBank	1122233 tax ID	*
[Ref.: #66792]	Methermicoccus shengliensis DSM 18856	2565956510	draft	JGI IMG/M	1122233 tax ID	*
[Ref.: #66792]	Methermicoccus shengliensis DSM 18856	1122233.4	wgs	PATRIC	1122233 tax ID	*

[Ref.: #7746]

GC-content

56 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methermicoccus shengliensis DSM 18856 DSM 18856 NCBI: GCA_000711905.1
[Ref.: #69480]	motile	no	86.439	no
[Ref.: #69480]	flagellated	no	96.082	no
[Ref.: #69480]	gram-positive	no	95.542	no
[Ref.: #69480]	anaerobic	yes	98.588	yes
[Ref.: #69480]	halophile	no	84.254	no
[Ref.: #69480]	spore-forming	no	95.807	no
[Ref.: #69480]	thermophile	yes	99.219	yes
[Ref.: #69480]	glucose-util	yes	74.609	no
[Ref.: #69480]	aerobic	no	95.261	yes
[Ref.: #69480]	glucose-ferment	no	61.522	no

Availability in culture collections External links

[Ref.: #7746]

Culture collection no.

DSM 18856, CGMCC 1.5056

[Ref.: #86648]

SI-ID 406207

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methermicoccus shengliensis gen. nov., sp. nov., a thermophilic, methylotrophic methanogen isolated from oil-production water, and proposal of Methermicoccaceae fam. nov.	Cheng L, Qiu TL, Yin XB, Wu XL, Hu GQ, Deng Y, Zhang H	Int J Syst Evol Microbiol	10.1099/ijs.0.65049-0	2007	*

References

#7746

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18856

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86648

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406207.1 )

* These data were automatically processed and therefore are not curated

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Methermicoccus shengliensis DSM 18856 DSM 18856

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