Name: Thermovibrio guaymasensis SL19
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17647

Type strain:

Species: Thermovibrio guaymasensis

Strain Designation: SL19

Culture col. no.: DSM 15521, JCM 12128

Strain history: S. L'Haridon SL19.

NCBI tax ID(s): 240167 (species)

SI-ID 297357

DSM 15521, JCM 12128

Special Collections

DSMZ
JCM

Section

Thermovibrio guaymasensis SL19 is an anaerobe, Gram-negative bacterium that was isolated from deep-sea hydrothermal vent chimney.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Desulfurobacteriales*
	Family	*Desulfurobacteriaceae*
	Genus	*Thermovibrio*
	Species	**Thermovibrio guaymasensis**
	Full Scientific Name (LPSN)	Thermovibrio guaymasensis L'Haridon et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.34

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5977]

Culture medium

DESULFUROBACTERIUM CRINIFEX MEDIUM (DSMZ Medium 829c)

[Ref.: #5977]

Culture medium growth

[Ref.: #5977]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5977]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5977]			growth	75 °C
[Ref.: #67770]			growth	75 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5977]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %91.89

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5977]	Sample type/isolated from	deep-sea hydrothermal vent chimney
[Ref.: #5977]	Geographic location (country and/or sea, region)	Pacific Ocean, Guaymas Basin
[Ref.: #5977]	Country	Mexico
[Ref.: #5977]	Country ISO 3 Code	MEX
[Ref.: #5977]	Continent	North America
[Ref.: #5977]	Geographic location	27.0167°/-111.4000°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal vent chimney at the Guaymas Basin
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY268937 (>99% sequence identity) for Thermovibrio guaymasensis subclade from Microbeatlas

Aquatic Samples	10
Soil Samples
Animal Samples
Plant Samples
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5977]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5977]	Thermovibrio guaymasensis strain SL19 16S ribosomal RNA gene, partial sequence	AY268937	1508	GenBank ENA	240167 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermovibrio guaymasensis DSM 15521	GCA_003633715	scaffold	GenBank ENA	240167 tax ID
[Ref.: #66792]	Thermovibrio guaymasensis strain DSM 15521	240167.3	wgs	PATRIC	240167 tax ID	*
[Ref.: #66792]	Thermovibrio guaymasensis DSM 15521	2756170387	draft	JGI IMG/M	240167 tax ID	*

[Ref.: #5977]

GC-content

46 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermovibrio guaymasensis DSM 15521 NCBI: GCA_003633715.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	72	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermovibrio guaymasensis strain DSM 15521 PATRIC: 240167.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.34	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.89	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.712	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.814	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	72.768	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	62.031	no

Availability in culture collections External links

[Ref.: #5977]

Culture collection no.

DSM 15521, JCM 12128

[Ref.: #86638]

SI-ID 297357

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria.	L'Haridon S, Reysenbach AL, Tindall BJ, Schonheit P, Banta A, Johnsen U, Schumann P, Gambacorta A, Stackebrandt E, Jeanthon C	Int J Syst Evol Microbiol	10.1099/ijs.0.63994-0	2006	*

References

#5977

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15521

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86638

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297357.1 )

* These data were automatically processed and therefore are not curated

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Thermovibrio guaymasensis DSM 15521

Thermovibrio guaymasensis strain DSM 15521

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