Actinospica robiniae (DSM 44927, JCM 14908, NRRL B-24432)

Name: Actinospica robiniae (DSM 44927, JCM 14908, NRRL B-24432)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17635

Type strain

Strain Designation GE134769

Culture col. no. DSM 44927 JCM 14908 NRRL B-24432 GE134769 NBRC 102112 1 more

NCBI tax ID(s) 479430 304901

Special Collections DSMZ JCM Literature strains

Links

Actinospica robiniae GE134769 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from forest soil.

spore-forming Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 343938

NRRL B-24432,DSM 44927,BCRC 16839,CCRC 16839,NBRC 102112,JCM 14908

@ref 20215

Last LPSN update 2025-12-16 09:51:08

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Catenulisporales

Family Actinospicaceae

Genus Actinospica

Species Actinospica robiniae

Full scientific name Actinospica robiniae Cavaletti et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31589	positive	1-1.2 µm	0.6 µm	rod-shaped
125438
125439	positive
125439

Pigmentation

31589

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12200	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12200	positive	growth	28	mesophilic
31589	positive	growth	17-33
31589	positive	optimum	22-28
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
31589	positive	optimum	5.5
31589	positive	growth	4.8-6.2

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31589	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation
31589
125439

Observation

@ref	Observation
31589	aggregates in chains
67770	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43413	62968 ChEBI	cellulose	+	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31589	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
31589	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12200	forest soil	Lombardia, Gerenzano	Italy	ITA	Europe
67770	Soil in a wooded area	Gerenzano	Italy	ITA	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ865863 (>99% sequence identity) for Actinospica robiniae from Microbeatlas

Aquatic Samples	342
Soil Samples	4561
Animal Samples	820
Plant Samples	697
Total Samples	6420

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12200	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM50428v1 assembly for Actinospica robiniae DSM 44927	scaffold	GCA_000504285	479430.3	2510065062	479430	74.69

Genome browser: GCA_000504285

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12200	Actinospica robiniae partial 16S rRNA gene, type strain GE134769T	AJ865863	1444		479430

GC content

@ref	GC-content (mol%)
12200	70.8
67770	70.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinospica robiniae DSM 44927
NCBI: GCA_000504285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	91.00	no
125439	motility	BacteriaNetⓘ	no	93.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinospica robiniae DSM 44927
PATRIC: 479430.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.35	no
125438	anaerobic	anaerobicⓘ	no	96.73	yes
125438	spore-forming	spore-formingⓘ	yes	87.85	yes
125438	aerobic	aerobicⓘ	yes	86.20	yes
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	90.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju.	Tovo A, Menzel P, Krogh A, Cosentino Lagomarsino M, Suweis S.	Nucleic Acids Res	10.1093/nar/gkaa568	2020
Genetics	Genome neighborhood network reveals insights into enediyne biosynthesis and facilitates prediction and prioritization for discovery.	Rudolf JD, Yan X, Shen B.	J Ind Microbiol Biotechnol	10.1007/s10295-015-1671-0	2016
	Natural diversity of cellulases, xylanases, and chitinases in bacteria.	Talamantes D, Biabini N, Dang H, Abdoun K, Berlemont R.	Biotechnol Biofuels	10.1186/s13068-016-0538-6	2016
Metabolism	Genomics of aerobic cellulose utilization systems in actinobacteria.	Anderson I, Abt B, Lykidis A, Klenk HP, Kyrpides N, Ivanova N.	PLoS One	10.1371/journal.pone.0039331	2012
Phylogeny	Actinospica durhamensis sp. nov., isolated from a spruce forest soil.	Golinska P, Zucchi TD, Silva L, Dahm H, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-015-0496-1	2015
Phylogeny	Actinospica robiniae gen. nov., sp. nov. and Actinospica acidiphila sp. nov.: proposal for Actinospicaceae fam. nov. and Catenulisporinae subord. nov. in the order Actinomycetales.	Cavaletti L, Monciardini P, Schumann P, Rohde M, Bamonte R, Busti E, Sosio M, Donadio S	Int J Syst Evol Microbiol	10.1099/ijs.0.63859-0	2006

References

#12200	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44927
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31589	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27878 (see below)
#43413	Iain Anderson, Birte Abt, Athanasios Lykidis, Hans-Peter Klenk, Nikos Kyrpides, Natalia Ivanova: Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria. PLoS ONE 7: 2012 ( DOI 10.1371/journal.pone.0039331 , PubMed 22723998 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinospica robiniae (DSM 44927, JCM 14908, NRRL B-24432)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000504285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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