Name: Caldilinea tarbellica D1-25-10-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17633

Type strain:

Species: Caldilinea tarbellica

Strain Designation: D1-25-10-4

Culture col. no.: DSM 22659, JCM 16120

Strain history: P. Grégoire D1-25-10-4.

NCBI tax ID(s): 859243 (species)

SI-ID 397289

DSM 22659

Other strains from Caldilinea tarbellica

C. tarbellica VI-60, DSM 14305

Section

Caldilinea tarbellica D1-25-10-4 is an anaerobe, thermophilic bacterium that was isolated from deep hot aquifer at a depth 149 m.

anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Caldilineae*
	Order	*Caldilineales*
	Family	*Caldilineaceae*
	Genus	*Caldilinea*
	Species	**Caldilinea tarbellica**
	Full Scientific Name (LPSN)	Caldilinea tarbellica Grégoire et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16451]

Culture medium

ANAEROLINEA MEDIUM (DSMZ Medium 1004)

[Ref.: #16451]

Culture medium growth

[Ref.: #16451]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16451]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16451]			growth	55 °C
[Ref.: #67770]			growth	60 °C

[Ref.: #16451]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16451]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16451]	Sample type/isolated from	deep hot aquifer at a depth 149 m
[Ref.: #16451]	Geographic location (country and/or sea, region)	Aquitaine Basin, Dax
[Ref.: #16451]	Country	France
[Ref.: #16451]	Country ISO 3 Code	FRA
[Ref.: #16451]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Deep hot aquifer in the Aquitaine Basin
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Groundwater
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM134893 (>99% sequence identity) for Caldilinea from Microbeatlas

Aquatic Samples	81
Soil Samples	5
Animal Samples	15
Plant Samples	1
Total Samples	102

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16451]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16451]	Caldilinea tarbellica strain D1-25-10-4 16S ribosomal RNA gene, partial sequence	HM134893	1400	ENA	859243 tax ID

[Ref.: #16451]	GC-content	61.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	61.9 mol%

Availability in culture collections External links

[Ref.: #16451]

Culture collection no.

DSM 22659, JCM 16120

[Ref.: #86625]

SI-ID 397289

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Litorilinea aerophila gen. nov., sp. nov., an aerobic member of the class Caldilineae, phylum Chloroflexi, isolated from an intertidal hot spring.	Kale V, Bjornsdottir SH, Friethjonsson OH, Petursdottir SK, Omarsdottir S, Hreggviethsson GO	Int J Syst Evol Microbiol	10.1099/ijs.0.044115-0	2012	*
Phylogeny	Caldilinea tarbellica sp. nov., a filamentous, thermophilic, anaerobic bacterium isolated from a deep hot aquifer in the Aquitaine Basin.	Gregoire P, Bohli M, Cayol JL, Joseph M, Guasco S, Dubourg K, Cambar J, Michotey V, Bonin P, Fardeau ML, Ollivier B	Int J Syst Evol Microbiol	10.1099/ijs.0.025676-0	2010	*

References

#16451

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22659

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86625

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397289.1 )

* These data were automatically processed and therefore are not curated

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