Name: Patulibacter ginsengiterrae P4-5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17631

Type strain:

Species: Patulibacter ginsengiterrae

Strain Designation: P4-5

Culture col. no.: DSM 25990, CECT 7603, KCTC 19427, JCM 31707

Strain history: <- JS Lee, KRIBB

NCBI tax ID(s): 556890 (species)

SI-ID 379366

CECT 7603, KCTC 19427, DSM 25990

Special Collections

Section

Patulibacter ginsengiterrae P4-5 is an aerobe, Gram-positive, motile bacterium that was isolated from soil, ginseng field.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Thermoleophilia*
	Order	*Solirubrobacterales*
	Family	*Patulibacteraceae*
	Genus	*Patulibacter*
	Species	**Patulibacter ginsengiterrae**
	Full Scientific Name (LPSN)	Patulibacter ginsengiterrae Kim et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30266]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #30266]	Cell length	0.8-1 µm

[Ref.: #30266]	Cell width	0.4-0.6 µm

[Ref.: #30266]	Cell shape	rod-shaped

[Ref.: #30266]	Motility	yes

[Ref.: #30266]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18143]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #18143]

Culture medium growth

[Ref.: #18143]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18143]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18143]	growth	25 °C
[Ref.: #30266]	growth	05-37 °C
[Ref.: #30266]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30266]			optimum	7
[Ref.: #30266]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30266]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30266]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30266]		NaCl		growth	<3	%

[Ref.: #67770]

Observation

quinones: DMK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30266]	acetate ChEBI	+	carbon source
[Ref.: #30266]	alanine ChEBI	+	carbon source
[Ref.: #30266]	arabinose ChEBI	+	carbon source
[Ref.: #30266]	citrate ChEBI	+	carbon source
[Ref.: #30266]	fucose ChEBI	+	carbon source
[Ref.: #30266]	gluconate ChEBI	+	carbon source
[Ref.: #30266]	glucose ChEBI	+	carbon source
[Ref.: #30266]	glycerol ChEBI	+	carbon source
[Ref.: #30266]	glycogen ChEBI	+	carbon source
[Ref.: #30266]	lactate ChEBI	+	carbon source
[Ref.: #30266]	malate ChEBI	+	carbon source
[Ref.: #30266]	maltose ChEBI	+	carbon source
[Ref.: #30266]	mannitol ChEBI	+	carbon source
[Ref.: #30266]	mannose ChEBI	+	carbon source
[Ref.: #30266]	melibiose ChEBI	+	carbon source
[Ref.: #30266]	proline ChEBI	+	carbon source
[Ref.: #30266]	propionate ChEBI	+	carbon source
[Ref.: #30266]	rhamnose ChEBI	+	carbon source
[Ref.: #30266]	salicin ChEBI	+	carbon source
[Ref.: #30266]	serine ChEBI	+	carbon source
[Ref.: #30266]	sorbitol ChEBI	+	carbon source
[Ref.: #30266]	sucrose ChEBI	+	carbon source
[Ref.: #30266]	trehalose ChEBI	+	carbon source
[Ref.: #30266]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30266]	acid phosphatase	+	3.1.3.2
[Ref.: #30266]	catalase	+	1.11.1.6
[Ref.: #30266]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30266]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18143]	Sample type/isolated from	soil, ginseng field
[Ref.: #18143]	Geographic location (country and/or sea, region)	Geumsan County
[Ref.: #18143]	Country	Republic of Korea
[Ref.: #18143]	Country ISO 3 Code	KOR
[Ref.: #18143]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Geumsan County
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of ginseng field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18143]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18143]	Patulibacter ginsengiterrae strain P4-5 16S ribosomal RNA gene, partial sequence	EU710748	1455	GenBank ENA	556890 tax ID

[Ref.: #18143]	GC-content	74.6 mol%
[Ref.: #67770]	GC-content	74.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #18143]

Culture collection no.

DSM 25990, CECT 7603, KCTC 19427, JCM 31707

[Ref.: #86623]

SI-ID 379366

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Patulibacter brassicae sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris).	Jin D, Kong X, Li H, Luo L, Zhuang X, Zhuang G, Deng Y, Bai Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001469	2016	*
Phylogeny	Patulibacter medicamentivorans sp. nov., isolated from activated sludge of a wastewater treatment plant.	Almeida B, Vaz-Moreira I, Schumann P, Nunes OC, Carvalho G, Crespo MTB	Int J Syst Evol Microbiol	10.1099/ijs.0.047522-0	2012	*
Phylogeny	Patulibacter ginsengiterrae sp. nov., isolated from soil of a ginseng field, and an emended description of the genus Patulibacter.	Kim KK, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.032052-0	2011	*

References

#18143

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25990

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30266

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26607 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#86623

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379366.1 )

#26607

IJSEM 563 2012 ( DOI 10.1099/ijs.0.032052-0 , PubMed 21515709 )

* These data were automatically processed and therefore are not curated

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