Name: Patulibacter americanus CP177-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17629

Type strain:

Species: Patulibacter americanus

Strain Designation: CP177-2

Culture col. no.: DSM 16676, ATCC BAA-1038, JCM 16550, KCTC 19770

Strain history: DSM 16676 <-- F. Garcia-Pichel <-- G. S. N. Reddy CP177-2.

NCBI tax ID(s): 1122939 (strain), 588672 (species)

SI-ID 407105

DSM 16676

Other strains from Patulibacter americanus

P. americanus CP153-3, DSM 16677

Section

Patulibacter americanus CP177-2 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Biological soil crusts.

Gram-positive
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Thermoleophilia*
	Order	*Solirubrobacterales*
	Family	*Patulibacteraceae*
	Genus	*Patulibacter*
	Species	**Patulibacter americanus**
	Full Scientific Name (LPSN)	Patulibacter americanus Reddy and Garcia-Pichel 2009

Information on morphological and physiological properties Morphology

[Ref.: #31752]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.565

[Ref.: #31752]	Cell shape	rod-shaped

[Ref.: #31752]	Motility	yes

[Ref.: #31752]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6559]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6559]

Culture medium growth

[Ref.: #6559]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6559]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6559]	growth	25 °C
[Ref.: #31752]	growth	10-30 °C
[Ref.: #31752]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #6559]	Temperature range	mesophilic
[Ref.: #31752]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31752]			optimum	7
[Ref.: #31752]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31752]

Oxygen tolerance

aerobe

[Ref.: #31752]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.988

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31752]		NaCl		growth	<3	%

[Ref.: #67770]

Observation

quinones: MK-7(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31752]	arginine ChEBI	+	carbon source
[Ref.: #31752]	glucose ChEBI	+	carbon source
[Ref.: #31752]	maltose ChEBI	+	carbon source
[Ref.: #31752]	melibiose ChEBI	+	carbon source
[Ref.: #31752]	sorbitol ChEBI	+	carbon source
[Ref.: #31752]	sucrose ChEBI	+	carbon source
[Ref.: #31752]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31752]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6559]	Sample type/isolated from	Biological soil crusts
[Ref.: #6559]	Geographic location (country and/or sea, region)	Colorado Plateau
[Ref.: #6559]	Country	USA
[Ref.: #6559]	Country ISO 3 Code	USA
[Ref.: #6559]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Biological soil crust from the Colorado Plateau
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ871306 (>99% sequence identity) for Patulibacter americanus subclade from Microbeatlas

Aquatic Samples	275
Soil Samples	849
Animal Samples	471
Plant Samples	385
Total Samples	1980

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6559]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31752]	Patulibacter americanus 16S rRNA gene, strain CP177-2	AJ871306	1459	GenBank	588672 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Patulibacter americanus DSM 16676	GCA_000420025	contig	GenBank	1122939 tax ID
[Ref.: #66792]	Patulibacter americanus DSM 16676	1122939.3	wgs	PATRIC	1122939 tax ID	*
[Ref.: #66792]	Patulibacter americanus DSM 16676	2524614558	draft	JGI IMG/M	1122939 tax ID	*

[Ref.: #31752]	GC-content	72 mol%
[Ref.: #67770]	GC-content	72 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	74.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Patulibacter americanus DSM 16676 PATRIC: 1122939.3
[Ref.: #69481]	spore-forming	no	66	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Patulibacter americanus DSM 16676 PATRIC: 1122939.3
[Ref.: #69480]	motile	yes	80.008	yes
[Ref.: #69480]	flagellated	no	90.178	no
[Ref.: #69480]	gram-positive	yes	89.999	yes
[Ref.: #69480]	anaerobic	no	98.555	no
[Ref.: #69480]	aerobic	yes	92.448	yes
[Ref.: #69480]	halophile	no	94.471	no
[Ref.: #69480]	spore-forming	no	85.047	yes
[Ref.: #69480]	glucose-util	yes	87.681	yes
[Ref.: #69480]	thermophile	no	98.962	yes
[Ref.: #69480]	glucose-ferment	no	85.805	no

Availability in culture collections External links

[Ref.: #6559]

Culture collection no.

DSM 16676, ATCC BAA-1038, JCM 16550, KCTC 19770

[Ref.: #86621]

SI-ID 407105

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Patulibacter brassicae sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris).	Jin D, Kong X, Li H, Luo L, Zhuang X, Zhuang G, Deng Y, Bai Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001469	2016	*
Phylogeny	Patulibacter medicamentivorans sp. nov., isolated from activated sludge of a wastewater treatment plant.	Almeida B, Vaz-Moreira I, Schumann P, Nunes OC, Carvalho G, Crespo MTB	Int J Syst Evol Microbiol	10.1099/ijs.0.047522-0	2012	*
Phylogeny	Patulibacter ginsengiterrae sp. nov., isolated from soil of a ginseng field, and an emended description of the genus Patulibacter.	Kim KK, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.032052-0	2011	*
Phylogeny	Description of Patulibacter americanus sp. nov., isolated from biological soil crusts, emended description of the genus Patulibacter Takahashi et al. 2006 and proposal of Solirubrobacterales ord. nov. and Thermoleophilales ord. nov.	Reddy GS, Garcia-Pichel F	Int J Syst Evol Microbiol	10.1099/ijs.0.64185-0	2009	*

References

#6559

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16676

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31752

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28026 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86621

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407105.1 )

#28026

IJSEM 87 2009 ( DOI 10.1099/ijs.0.64185-0 , PubMed 19126730 )

* These data were automatically processed and therefore are not curated

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Patulibacter americanus DSM 16676

Patulibacter americanus DSM 16676

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