Name: Pseudofulvimonas gallinarii Sa15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17625

Type strain:

Species: Pseudofulvimonas gallinarii

Strain Designation: Sa15

Culture col. no.: DSM 21944, CCM 7599, CCUG 57117

Strain history: <- P. Kämpfer, Univ. Giessen, Germany <- E. Martin

NCBI tax ID(s): 634155 (species)

SI-ID 403666

DSM 21944

Section

Pseudofulvimonas gallinarii Sa15 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air in a duck barn.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Pseudofulvimonas*
	Species	**Pseudofulvimonas gallinarii**
	Full Scientific Name (LPSN)	Pseudofulvimonas gallinarii Kämpfer et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29506]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #29506]	Cell length	2 µm

[Ref.: #29506]	Cell shape	rod-shaped

[Ref.: #29506]	Motility	no

[Ref.: #61203]

Incubation period

2 days

[Ref.: #29506]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16013]

Culture medium

REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)

[Ref.: #16013]

Culture medium growth

[Ref.: #16013]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16013]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16013]	growth	37 °C
[Ref.: #29506]	growth	25-30 °C
[Ref.: #61203]	growth	37 °C

[Ref.: #16013]	Temperature range	mesophilic
[Ref.: #29506]	Temperature range	mesophilic
[Ref.: #61203]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29506]	Oxygen tolerance	aerobe
[Ref.: #61203]	Oxygen tolerance	aerobe

[Ref.: #29506]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29506]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #29506]	arabinose ChEBI	+	carbon source
[Ref.: #29506]	cellobiose ChEBI	+	carbon source
[Ref.: #29506]	fructose ChEBI	+	carbon source
[Ref.: #29506]	galactose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29506]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	purine metabolism	75.53	71 of 94
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	glutamate and glutamine metabolism	60.71	17 of 28
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	60	3 of 5
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	valine metabolism	55.56	5 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	55.56	5 of 9
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	oxidative phosphorylation	31.87	29 of 91
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	Entner Doudoroff pathway	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16013]	Sample type/isolated from	air in a duck barn
[Ref.: #16013]	Country	Germany
[Ref.: #16013]	Country ISO 3 Code	DEU
[Ref.: #16013]	Continent	Europe

[Ref.: #61203]	Sample type/isolated from	Duck stable
[Ref.: #61203]	Country	Germany
[Ref.: #61203]	Country ISO 3 Code	DEU
[Ref.: #61203]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Environmental	#Air	#Indoor Air
#Host	#Birds	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN298515 (>99% sequence identity) for Pseudofulvimonas gallinarii subclade from Microbeatlas

Aquatic Samples	87
Soil Samples	270
Animal Samples	267
Plant Samples	54
Total Samples	678

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16013]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16013]	Pseudofulvimonas gallinarii partial 16S rRNA gene, type strain Sa15T	FN298515	1386	ENA	634155 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudofulvimonas gallinarii DSM 21944	2784746793	draft	JGI IMG/M	634155 tax ID	*
[Ref.: #66792]	Pseudofulvimonas gallinarii DSM 21944	GCA_004798975	contig	GenBank	634155 tax ID	*
[Ref.: #66792]	Pseudofulvimonas gallinarii DSM 21944	GCA_003732435	scaffold	GenBank	634155 tax ID	*
[Ref.: #66792]	Pseudofulvimonas gallinarii strain DSM 21944	634155.3	wgs	PATRIC	634155 tax ID	*
[Ref.: #66792]	Pseudofulvimonas gallinarii strain DSM 21944	634155.4	wgs	PATRIC	634155 tax ID	*
[Ref.: #66792]	Pseudofulvimonas gallinarii strain DSM 21944	634155.5	wgs	PATRIC	634155 tax ID	*

[Ref.: #16013]	GC-content	68.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29506]	GC-content	68.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudofulvimonas gallinarii DSM 21944 NCBI: GCA_003732435.1
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudofulvimonas gallinarii DSM 21944 NCBI: GCA_003732435.1
[Ref.: #69480]	motile	no	86.515	yes
[Ref.: #69480]	flagellated	no	96.461	no
[Ref.: #69480]	gram-positive	no	98.224	yes
[Ref.: #69480]	anaerobic	no	98.235	yes
[Ref.: #69480]	aerobic	yes	85.16	yes
[Ref.: #69480]	halophile	no	91.251	no
[Ref.: #69480]	spore-forming	no	95.245	yes
[Ref.: #69480]	glucose-util	yes	66.799	no
[Ref.: #69480]	thermophile	no	98.743	yes
[Ref.: #69480]	glucose-ferment	no	88.124	no

Availability in culture collections External links

[Ref.: #16013]

Culture collection no.

DSM 21944, CCM 7599, CCUG 57117

[Ref.: #86617]

SI-ID 403666

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudofulvimonas gallinarii gen. nov., sp. nov., a new member of the family Xanthomonadaceae.	Kampfer P, Martin E, Lodders N, Langer S, Schumann P, Jackel U, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014548-0	2009	*

References

#16013

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21944

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29506

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25905 (see below)

#61203 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57117

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86617

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403666.1 )

#25905

IJSEM 1427 2010 ( DOI 10.1099/ijs.0.014548-0 , PubMed 19671709 )

* These data were automatically processed and therefore are not curated

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Pseudofulvimonas gallinarii DSM 21944

Pseudofulvimonas gallinarii DSM 21944

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