Name: Xanthomonas hortorum DSM 19143
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17616

Type strain:

Species: Xanthomonas hortorum

Culture col. no.: DSM 19143, ICMP 453, LMG 733, NCPPB 939

Strain history: <- NCPPB <- ICPB <- W. Burkholder

NCBI tax ID(s): 56454 (species)

SI-ID 5589

LMG 733, ICMP 453, NCPPB 939, PDDCC 453, DSM 19143, CFBP 4925, CFBP 5858

Special Collections

DSMZ

Other strains from Xanthomonas hortorum

Section

Xanthomonas hortorum DSM 19143 is a Gram-negative plant pathogen that was isolated from Hedera helix.

Gram-negative
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas hortorum**
	Full Scientific Name (LPSN)	Xanthomonas hortorum Vauterin et al. 1995

	Synonym	Xanthomonas cynarae
	Synonym	Xanthomonas gardneri

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.994

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7840]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7840]

Culture medium growth

[Ref.: #7840]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7840]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7840]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7840]	Sample type/isolated from	Hedera helix
[Ref.: #7840]	Host species	Hedera helix
[Ref.: #7840]	Country	USA
[Ref.: #7840]	Country ISO 3 Code	USA
[Ref.: #7840]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y10759 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7840]	Pathogenicity (plant)	yes
[Ref.: #7840]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7840]	X.hortorum 16S rRNA gene	Y10759	1502	GenBank ENA	56454 tax ID
[Ref.: #20218]	Xanthomonas hortorum pv. hederae clone K0870 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	HM181885	557	GenBank ENA	453603 tax ID	*
[Ref.: #20218]	Xanthomonas hortorum strain LMG733 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF209758	510	GenBank ENA	56454 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas hortorum pv. hederae strain WHRI 7744	453603.4	wgs	PATRIC	453603 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas hortorum pv. hederae strain WHRI 7744 PATRIC: 453603.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.71	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.848	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.616	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.929	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.21	no

Availability in culture collections External links

[Ref.: #7840]

Culture collection no.

DSM 19143, ICMP 453, LMG 733, NCPPB 939

[Ref.: #86608]

SI-ID 5589

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species.	Michalopoulou VA, Vicente JG, Studholme DJ, Sarris PF	Microbiol Resour Announc	10.1128/MRA.00923-18	2018	*
	First Report of Xanthomonas hortorum pv. hederae Causing Bacterial Leaf Spot of Hedera hibernica in Slovenia.	Pirc M, Dreo T, Sustarsic M, Erjavec J, Ravnikar M	Plant Dis	10.1094/PDIS-06-11-0498	2012	*

References

#7840

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19143

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86608

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5589.1 )

* These data were automatically processed and therefore are not curated

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Xanthomonas hortorum pv. hederae strain WHRI 7744

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