Name: Xanthomonas sp. DSM 3851
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17597

Type strain:

Species: Xanthomonas sp.

Culture col. no.: DSM 3851, ATCC 13461, NCPPB 989, JCM 20467, CCM 1447, IAM 12308, ICMP 451, ICPB XH3, LMG 7416, VKM B-618

Strain history: IAM 12308 <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 13461 ("Xanthomonas holcicola") <-- W. H. Burkholder; XH3.

NCBI tax ID(s): 29446 (species)

SI-ID 13888

LMG 7416, ATCC 13461, ICMP 451, NCPPB 989, PDDCC 451, DSM 3851, CCM 1447, VKM B-618, IAM 12308, ICMP 575, CGMCC 1.1510, JCM 20467

Other strains from Xanthomonas sp.

X. sp. DSM 1350, ICPB P 121
X. sp. DSM 50861, DSM 60026, ICPB X 10
X. sp. Leaf148, DSM 102765
X. sp. Leaf131, DSM 102766
X. sp. CCUG 31710
X. sp. CCUG 32784
X. sp. CCUG 44461
X. sp. CCUG 46779
X. sp. CCUG 49005
X. sp. CCUG 49670
X. sp. CCUG 54836
X. sp. IMI 372762
X. sp. JCM 16245, KCTC 22456
X. sp. JCM 16246, KCTC 22457
X. sp. JCM 3851, IAM 13033
X. sp. JCM 3852, IAM 13034
X. sp. JCM 3853, IAM 13035
X. sp. JCM 3854, IAM 13036
X. sp. JCM 3855, IAM 13037
X. sp. JCM 3856, IAM 13038
X. sp. JCM 3857, IAM 13039
X. sp. JCM 3858, IAM 13040

Section

Xanthomonas sp. DSM 3851 is a mesophilic, motile bacterium that was isolated from Holcussp..

motile
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Full Scientific Name (LPSN)	Xanthomonas Dowson 1939 (Approved Lists 1980)

Synonym

"Phytomonas"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #69480]	Motility	yes Confidence in %97.014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1481]

Culture medium

GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54)

[Ref.: #1481]

Culture medium growth

[Ref.: #1481]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1481]

Culture medium composition

expand / minimize

[Ref.: #1481]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1481]

Culture medium growth

[Ref.: #1481]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1481]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1481]			growth	26 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #1481]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #1481]

Name of produced compound

restriction endonuclease XhoI

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1481]	Sample type/isolated from	Holcussp.
[Ref.: #1481]	Host species	Holcus

[Ref.: #67770]	Sample type/isolated from	Leaf of Holcus sp.
[Ref.: #67770]	Host species	Holcus sp.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Texas
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas vasicola NCPPB 989	GCA_000772795	scaffold	GenBank	56459 tax ID	*
[Ref.: #66792]	Xanthomonas vasicola NCPPB 989	56459.26	wgs	PATRIC	56459 tax ID	*
[Ref.: #66792]	Xanthomonas vasicola NCPPB 989	2645727931	draft	JGI IMG/M	56459 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xanthomonas vasicola NCPPB 989 PATRIC: 56459.26
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas vasicola NCPPB 989 NCBI: GCA_000772795.1
[Ref.: #69480]	motile	yes	82.702	no
[Ref.: #69480]	flagellated	no	88.921	no
[Ref.: #69480]	gram-positive	no	98.216	no
[Ref.: #69480]	anaerobic	no	98.933	no
[Ref.: #69480]	aerobic	yes	92.523	no
[Ref.: #69480]	halophile	no	95.146	no
[Ref.: #69480]	spore-forming	no	95.638	no
[Ref.: #69480]	thermophile	no	99.195	yes
[Ref.: #69480]	glucose-util	yes	93.75	no
[Ref.: #69480]	glucose-ferment	no	89.333	no

Availability in culture collections External links

[Ref.: #1481]

Culture collection no.

DSM 3851, ATCC 13461, NCPPB 989, JCM 20467, CCM 1447, IAM 12308, ICMP 451, ICPB XH3, LMG 7416, VKM B-618

[Ref.: #86592]

SI-ID 13888

References

#1481

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3851

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86592

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13888.1 )

* These data were automatically processed and therefore are not curated

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Xanthomonas vasicola NCPPB 989

Xanthomonas vasicola NCPPB 989

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