Thermomonas hydrothermalis (DSM 14834, ATCC BAA-470, CIP 108356)

Name: Thermomonas hydrothermalis (DSM 14834, ATCC BAA-470, CIP 108356)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17577

Type strain

Strain Designation SGM-6

Culture col. no. DSM 14834 ATCC BAA-470 CIP 108356 SGM-6

NCBI tax ID(s) 213588

Special Collections DSMZ CIP

Links

Thermomonas hydrothermalis SGM-6 is an obligate aerobe, thermophilic, Gram-negative prokaryote that was isolated from hot spring.

Gram-negative rod-shaped obligate aerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 97812

LMG 21936,DSM 14834,ATCC BAA-470,CIP 108356

@ref 20215

Last LPSN update 2025-12-16 09:51:07

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Thermomonas

Species Thermomonas hydrothermalis

Full scientific name Thermomonas hydrothermalis Alves et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		95.9
125438	negative		99
120013	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5567	CASTENHOLZ MEDIUM (DSMZ Medium 86)	Medium recipe at MediaDive	Name: CASTENHOLZ MEDIUM (DSMZ Medium 86) Composition: Yeast extract 1.0 g/l Tryptone 1.0 g/l NaNO3 0.689 g/l Na2HPO4 x 2 H2O 0.14 g/l KNO3 0.103 g/l MgSO4 x 7 H2O 0.1 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.06 g/l NaCl 0.008 g/l MnSO4 x H2O 0.0022 g/l H3BO3 0.0005 g/l ZnSO4 x 7 H2O 0.0005 g/l FeCl3 x 6 H2O 0.00047 g/l CoCl2 x 6 H2O 4.6e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l Distilled water
33061	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120013	CIP Medium 572	Medium recipe at CIP
120013	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5567	positive	growth	50	thermophilic
33061	positive	growth	55	thermophilic
120013	positive	growth	45	thermophilic
120013	negative	growth	10
120013	negative	growth	22
120013	negative	growth	30
120013	negative	growth	37
120013	negative	growth	55

Physiology and metabolism

Oxygen tolerance

120013

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		94.1
125438		94.33

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120013	NaCl	positive	growth	0 %
120013	NaCl		growth	2 %
120013	NaCl		growth	4 %
120013	NaCl		growth	6 %
120013	NaCl		growth	8 %
120013	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120013	4853 ChEBI	esculin	+	hydrolysis
120013	17632 ChEBI	nitrate	-	reduction
120013	16301 ChEBI	nitrite	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120013	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120013	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120013	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120013	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120013	caseinase	+	3.4.21.50
120013	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
120013	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120013	gamma-glutamyltransferase	+	2.3.2.2
120013	gelatinase	+
120013	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120013	lipase	+
68382	lipase (C 14)	+		from API zym
120013	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120013	ornithine decarboxylase	-	4.1.1.17
120013	oxidase	+
120013	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
120013	tween esterase	-
120013	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	octane oxidation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	butanoate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	palmitate biosynthesis	95.45	21 of 22
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	methionine metabolism	84.62	22 of 26
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	glycogen metabolism	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	valine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	purine metabolism	76.6	72 of 94
66794	tryptophan metabolism	76.32	29 of 38
66794	gluconeogenesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	alanine metabolism	72.41	21 of 29
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	pyrimidine metabolism	71.11	32 of 45
66794	propionate fermentation	70	7 of 10
66794	lipid metabolism	67.74	21 of 31
66794	IAA biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	non-pathway related	60.53	23 of 38
66794	cellulose degradation	60	3 of 5
66794	starch degradation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	arginine metabolism	54.17	13 of 24
66794	catecholamine biosynthesis	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	heme metabolism	50	7 of 14
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	proline metabolism	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	polyamine pathway	43.48	10 of 23
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	D-cycloserine biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	oxidative phosphorylation	38.46	35 of 91
66794	vitamin B1 metabolism	38.46	5 of 13
66794	degradation of sugar alcohols	37.5	6 of 16
66794	ketogluconate metabolism	37.5	3 of 8
66794	methane metabolism	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	cyanate degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of pentoses	28.57	8 of 28
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	carotenoid biosynthesis	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	sulfate reduction	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120013	-	+	+	+	+	+	+	-	+	-	+	+	-	-	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5567	hot spring	Sáo Gemil	Portugal	PRT	Europe
120013	Environment, Hot spring		Portugal	PRT	Europe

Taxonmaps

69479

Global distribution of 16S sequence AF542054 (>99% sequence identity) for Thermomonas hydrothermalis subclade from Microbeatlas

Aquatic Samples	1112
Soil Samples	180
Animal Samples	971
Plant Samples	59
Total Samples	2322

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5567	1	Risk group (German classification) According to TRBA 466
120013	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2582581272 annotated assembly for Thermomonas hydrothermalis DSM 14834	scaffold	GCA_900129205	213588.7	2582581272	213588	59.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Thermomonas hydrothermalis 16S ribosomal RNA gene, partial sequence	AF542054	1478		213588

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermomonas hydrothermalis DSM 14834
NCBI: GCA_900129205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.10	no
125439	motility	BacteriaNetⓘ	yes	88.10	no
125439	gram_stain	BacteriaNetⓘ	negative	95.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermomonas hydrothermalis DSM 14834
NCBI: GCA_900129205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.36	yes
125438	aerobic	aerobicⓘ	yes	84.04	yes
125438	spore-forming	spore-formingⓘ	no	94.33	no
125438	thermophilic	thermophileⓘ	no	71.39	yes
125438	flagellated	motile2+ⓘ	no	75.52	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic insights into Thermomonas hydrothermalis: potential applications in industrial biotechnology	Yasar Yildiz S.	World J Microbiol Biotechnol.		2025
Biotechnology	Genomic insights into Thermomonas hydrothermalis: potential applications in industrial biotechnology.	Yasar Yildiz S.	World J Microbiol Biotechnol	10.1007/s11274-024-04240-3	2025
	Global Association between Thermophilicity and Vancomycin Susceptibility in Bacteria.	Roy C, Alam M, Mandal S, Haldar PK, Bhattacharya S, Mukherjee T, Roy R, Rameez MJ, Misra AK, Chakraborty R, Nanda AK, Mukhopadhyay SK, Ghosh W.	Front Microbiol	10.3389/fmicb.2016.00412	2016
Phylogeny	Thermomonas carbonis sp. nov., isolated from the soil of a coal mine.	Wang L, Zheng S, Wang D, Wang L, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.063800-0	2014
Phylogeny	Thermomonas koreensis sp. nov., a mesophilic bacterium isolated from a ginseng field.	Kim MK, Im WT, In JG, Kim SH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64049-0	2006
Phylogeny	Thermomonas hydrothermalis sp. nov., a new slightly thermophilic gamma-proteobacterium isolated from a hot spring in central Portugal.	Alves MP, Rainey FA, Nobre MF, da Costa MS	Syst Appl Microbiol	10.1078/072320203322337335	2003
Phylogeny	Thermomonas flagellata sp. nov. and Thermomonas alba sp. nov., two novel members of the phylum Pseudomonadota isolated from hot spring sediments.	Liu ZT, Dai JY, Lian ZH, Liu L, Xian WD, Li MM, Fang BZ, Jiao JY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005444	2022

References

#5567	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14834
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33061	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120013	Collection of Institut Pasteur ; Curators of the CIP; CIP 108356
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thermomonas hydrothermalis (DSM 14834, ATCC BAA-470, CIP 108356)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900129205

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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