Name: Thermomonas haemolytica A50-7-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17573

Type strain:

Species: Thermomonas haemolytica

Strain Designation: A50-7-3

Culture col. no.: DSM 13605

Strain history: <- H.-J. Busse; A50-7-3 <- M. Salkinoja-Salonen

NCBI tax ID(s): 141949 (species)

SI-ID 14998

LMG 19653, DSM 13605

Other strains from Thermomonas haemolytica

T. haemolytica B50-7-1, DSM 13598
T. haemolytica B50-8-1, DSM 13599
T. haemolytica D50-7-1, DSM 13610

Section

Thermomonas haemolytica A50-7-3 is a mesophilic, Gram-negative bacterium that was isolated from kaoline slurry.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Thermomonas*
	Species	**Thermomonas haemolytica**
	Full Scientific Name (LPSN)	Thermomonas haemolytica Busse et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5106]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #5106]

Culture medium growth

[Ref.: #5106]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5106]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5106]			growth	37 °C

[Ref.: #5106]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5106]	Sample type/isolated from	kaoline slurry
[Ref.: #5106]	Country	Finland
[Ref.: #5106]	Country ISO 3 Code	FIN
[Ref.: #5106]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ300185 (>99% sequence identity) for Thermomonas haemolytica subclade from Microbeatlas

Aquatic Samples	341
Soil Samples	49
Animal Samples	65
Plant Samples	22
Total Samples	477

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5106]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thermomonas haemolytica partial 16S rRNA gene, strain A50-7-3	AJ300185	1500	ENA	141949 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermomonas haemolytica DSM 13605	GCA_004346265	contig	GenBank	141949 tax ID	*
[Ref.: #66792]	Thermomonas haemolytica strain DSM 13605	141949.5	wgs	PATRIC	141949 tax ID	*
[Ref.: #66792]	Thermomonas haemolytica DSM 13605	2784746806	draft	JGI IMG/M	141949 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermomonas haemolytica strain DSM 13605 PATRIC: 141949.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermomonas haemolytica strain DSM 13605 PATRIC: 141949.5
[Ref.: #69480]	motile	yes	75.995	no
[Ref.: #69480]	gram-positive	no	98.772	no
[Ref.: #69480]	anaerobic	no	98.564	no
[Ref.: #69480]	halophile	no	95.451	no
[Ref.: #69480]	spore-forming	no	96.719	no
[Ref.: #69480]	thermophile	no	93.056	no
[Ref.: #69480]	glucose-util	yes	76.247	no
[Ref.: #69480]	aerobic	yes	79.432	no
[Ref.: #69480]	flagellated	no	85.305	no
[Ref.: #69480]	glucose-ferment	no	89.953	no

Availability in culture collections External links

[Ref.: #5106]

Culture collection no.

DSM 13605

[Ref.: #86569]

SI-ID 14998

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermomonas carbonis sp. nov., isolated from the soil of a coal mine.	Wang L, Zheng S, Wang D, Wang L, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.063800-0	2014	*
Phylogeny	Aspromonas composti gen. nov., sp. nov., a novel member of the family Xanthomonadaceae.	Jin L, Kim KK, Im WT, Yang HC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64472-0	2007	*
Phylogeny	Thermomonas koreensis sp. nov., a mesophilic bacterium isolated from a ginseng field.	Kim MK, Im WT, In JG, Kim SH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64049-0	2006	*
Phylogeny	Thermomonas flagellata sp. nov. and Thermomonas alba sp. nov., two novel members of the phylum Pseudomonadota isolated from hot spring sediments.	Liu ZT, Dai JY, Lian ZH, Liu L, Xian WD, Li MM, Fang BZ, Jiao JY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005444	2022	*

References

#5106

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13605

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86569

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14998.1 )

* These data were automatically processed and therefore are not curated

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Thermomonas haemolytica strain DSM 13605

Thermomonas haemolytica strain DSM 13605

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