Silanimonas lenta 25-4 | Type strain | DSM 16282 | BacDiveID:17530

Strain identifier

BacDive ID: 17530

Type strain:

Species: Silanimonas lenta

Strain Designation: 25-4

Culture col. no.: DSM 16282

Strain history: <- C.-J. Kim, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea; 25-4 <- E. M. Lee

NCBI tax ID(s): 1123253 (strain), 265429 (species)

SI-ID 135135

DSM 16282, KCTC 12236, BCRC 17540, CCRC 17540

Section

Silanimonas lenta 25-4 is a mesophilic, Gram-negative bacterium that was isolated from hot spring water.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Silanimonas*
	Species	**Silanimonas lenta**
	Full Scientific Name (LPSN)	Silanimonas lenta Lee et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.967

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

R2A MEDIUM (DSMZ Medium 830)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6272]			growth	37 °C

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6272]	Sample type/isolated from	hot spring water
[Ref.: #6272]	Country	Republic of Korea
[Ref.: #6272]	Country ISO 3 Code	KOR
[Ref.: #6272]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Global distribution of 16S sequence AY557615 (>99% sequence identity) for Silanimonas lenta subclade from Microbeatlas

Aquatic Samples	877
Soil Samples	333
Animal Samples	110
Plant Samples	76
Total Samples	1396

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6272]	Silanimonas lenta strain 25-4 16S ribosomal RNA gene, partial sequence	AY557615	1382	ENA	265429 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Silanimonas lenta DSM 16282	GCA_000429065	scaffold	GenBank	1123253 tax ID	*
[Ref.: #66792]	Silanimonas lenta DSM 16282	1123253.3	wgs	PATRIC	1123253 tax ID	*
[Ref.: #66792]	Silanimonas lenta DSM 16282	2524614862	draft	JGI IMG/M	1123253 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Silanimonas lenta DSM 16282 DSM 16282 NCBI: GCA_000429065.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Silanimonas lenta DSM 16282 DSM 16282 NCBI: GCA_000429065.1
[Ref.: #69480]	motile	yes	78.02	no
[Ref.: #69480]	flagellated	no	74.386	no
[Ref.: #69480]	gram-positive	no	98.917	no
[Ref.: #69480]	anaerobic	no	95.668	no
[Ref.: #69480]	aerobic	yes	82.07	no
[Ref.: #69480]	halophile	no	93.868	no
[Ref.: #69480]	spore-forming	no	96.395	no
[Ref.: #69480]	glucose-util	yes	79.327	no
[Ref.: #69480]	thermophile	no	83.815	yes
[Ref.: #69480]	glucose-ferment	no	86.049	no

Availability in culture collections External links

Culture collection no.

SI-ID 135135

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Silanimonas algicola sp. nov., isolated from laboratory culture of a bloom-forming cyanobacterium, Microcystis.	Chun SJ, Cui Y, Ko SR, Lee HG, Oh HM, Ahn CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002102	2017	*
Phylogeny	Silanimonas lenta gen. nov., sp. nov., a slightly thermophilic and alkaliphilic gammaproteobacterium isolated from a hot spring.	Lee EM, Jeon CO, Choi I, Chang KS, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63328-0	2005	*

References

#6272

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16282

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86525

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135135.1 )

* These data were automatically processed and therefore are not curated

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