Rhodanobacter terrae (DSM 19241, KACC 11761, GP18-1)

Name: Rhodanobacter terrae (DSM 19241, KACC 11761, GP18-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17519

Type strain

Strain Designation GP18-1

Culture col. no. DSM 19241 KACC 11761 GP18-1

NCBI tax ID(s) 418647

Special Collections DSMZ Literature strains

History DSMZ <- S.-W. Kwon, KACC, Suwon, South Korea

Links

Rhodanobacter terrae GP18-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil of ginseng field.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404466

DSM 19241

@ref 20215

Last LPSN update 2026-05-29 08:29:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Rhodanobacter

Species Rhodanobacter terrae

Full scientific name Rhodanobacter terrae Weon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
32132	negative	3.5 µm	0.5 µm	rod-shaped
125439	negative					99.166

Pigmentation

32132

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7904	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7904	positive	growth	28
32132	positive	growth	05-30
32132	positive	optimum	26.5

Culture pH

@ref	Ability	Type	PH	PH range
32132	positive	optimum	6
32132	positive	growth	4.0-8.0	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32132	aerobe
125439	obligate aerobe	99.525

Spore formation

@ref	Spore formation	Confidence
125439		99.817

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32132	NaCl	positive	growth	<2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32132	37054 ChEBI	3-hydroxybutyrate	+	carbon source
32132	30089 ChEBI	acetate	+	carbon source
32132	4853 ChEBI	esculin	+	hydrolysis
32132	17234 ChEBI	glucose	+	carbon source
32132	17306 ChEBI	maltose	+	carbon source
32132	37684 ChEBI	mannose	+	carbon source
32132	506227 ChEBI	N-acetylglucosamine	+	carbon source
32132	26271 ChEBI	proline	+	carbon source
32132	53426 ChEBI	tween 80	+	carbon source
32132	31011 ChEBI	valerate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32132	acid phosphatase	+	3.1.3.2
32132	alkaline phosphatase	+	3.1.3.1
32132	catalase	+	1.11.1.6
32132	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7904	soil of ginseng field	Ansung province	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7904	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265700v1 assembly for Rhodanobacter terrae KACC 11761	scaffold	GCA_042657005	418647	30.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7904	Rhodanobacter terrae strain GP18-1 16S ribosomal RNA gene, partial sequence	EF166076	1492		418647

GC content

32132

GC-content (mol%)62.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265700v1 assembly for Rhodanobacter terrae KACC 11761
NCBI: GCA_042657005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.53	no
125439	gram_stain	BacteriaNetⓘ	negative	99.17	no
125439	spore_formation	BacteriaNetⓘ	no	99.82	no
125439	motility	BacteriaNetⓘ	yes	81.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella agri sp. nov., isolated from reclaimed grassland soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002291	2017
Phylogeny	Rhodanobacter humi sp. nov., an acid-tolerant and alkalitolerant gammaproteobacterium isolated from forest soil.	Dahal RH, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001786	2017
Phylogeny	Rhodanobacter koreensis sp. nov., a bacterium isolated from tomato rhizosphere.	Won K, Singh H, Ngo HTT, Son H, Kook M, Kim KY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000077	2015
Phylogeny	Rhodanobacter glycinis sp. nov., a yellow-pigmented gammaproteobacterium isolated from the rhizoplane of field-grown soybean.	Madhaiyan M, Poonguzhali S, Saravanan VS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.055525-0	2014
Phylogeny	Rhodanobacter panaciterrae sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a ginseng field.	Wang L, An DS, Kim SG, Jin FX, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.025718-0	2011
Phylogeny	Rhodanobacter ginsengisoli sp. nov. and Rhodanobacter terrae sp. nov., isolated from soil cultivated with Korean ginseng.	Weon HY, Kim BY, Hong SB, Jeon YA, Kwon SW, Go SJ, Koo BS	Int J Syst Evol Microbiol	10.1099/ijs.0.65018-0	2007

References

#7904	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19241
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28376	IJSEM 2810 2007 ( DOI 10.1099/ijs.0.65018-0 , PubMed 18048729 )
#32132	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28376
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Rhodanobacter terrae (DSM 19241, KACC 11761, GP18-1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042657005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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