Name: Pseudoxanthomonas kaohsiungensis J36
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17507

Type strain:

Species: Pseudoxanthomonas kaohsiungensis

Strain Designation: J36

Culture col. no.: DSM 17583, BCRC 17375, CCUG 55854, LMG 22530

Strain history: <- BCRC <- J.-S. Chang, Taiwan; J36

NCBI tax ID(s): 283923 (species)

SI-ID 132097

LMG 22530, BCRC 17375, DSM 17583, CCRC 17375, CCUG 55854

Other strains from Pseudoxanthomonas kaohsiungensis

P. kaohsiungensis CCUG 23633
P. kaohsiungensis CCUG 47624

Section

Pseudoxanthomonas kaohsiungensis J36 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from waste water from oil-polluted site.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Pseudoxanthomonas*
	Species	**Pseudoxanthomonas kaohsiungensis**
	Full Scientific Name (LPSN)	Pseudoxanthomonas kaohsiungensis Chang et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7070]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7070]

Culture medium growth

[Ref.: #7070]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7070]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7070]			growth	35 °C
[Ref.: #60759]			growth	37 °C

[Ref.: #7070]	Temperature range	mesophilic
[Ref.: #60759]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60759]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

[Ref.: #7070]

Name of produced compound

biosurfactant

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7070]	24628	+	-	-	-	-	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7070]	Sample type/isolated from	waste water from oil-polluted site
[Ref.: #7070]	Geographic location (country and/or sea, region)	Kaohsiung
[Ref.: #7070]	Country	Taiwan
[Ref.: #7070]	Country ISO 3 Code	TWN
[Ref.: #7070]	Continent	Asia

[Ref.: #60759]	Sample type/isolated from	Waste water
[Ref.: #60759]	Geographic location (country and/or sea, region)	Kaohsiung
[Ref.: #60759]	Country	Taiwan
[Ref.: #60759]	Country ISO 3 Code	TWN
[Ref.: #60759]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY650027 (>99% sequence identity) for Pseudoxanthomonas from Microbeatlas

Aquatic Samples	1500
Soil Samples	1050
Animal Samples	439
Plant Samples	203
Total Samples	3192

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7070]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7070]	Pseudoxanthomonas kaohsiungensis J36 16S ribosomal RNA gene, partial sequence	AY650027	1422	ENA	283923 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoxanthomonas kaohsiungensis DSM 17583	GCA_010211765	contig	GenBank	283923 tax ID	*
[Ref.: #66792]	Pseudoxanthomonas kaohsiungensis strain DSM 17583	283923.3	wgs	PATRIC	283923 tax ID	*

[Ref.: #7070]

GC-content

60.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoxanthomonas kaohsiungensis strain DSM 17583 PATRIC: 283923.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoxanthomonas kaohsiungensis strain DSM 17583 PATRIC: 283923.3
[Ref.: #69480]	motile	yes	80.475	no
[Ref.: #69480]	gram-positive	no	98.703	no
[Ref.: #69480]	anaerobic	no	98.839	yes
[Ref.: #69480]	halophile	no	96.276	no
[Ref.: #69480]	spore-forming	no	95.448	no
[Ref.: #69480]	glucose-util	yes	91.077	yes
[Ref.: #69480]	flagellated	no	88.802	no
[Ref.: #69480]	aerobic	yes	94.19	no
[Ref.: #69480]	thermophile	no	96.03	yes
[Ref.: #69480]	glucose-ferment	no	90.651	no

Availability in culture collections External links

[Ref.: #7070]

Culture collection no.

DSM 17583, BCRC 17375, CCUG 55854, LMG 22530

[Ref.: #86504]

SI-ID 132097

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoxanthomonas kaohsiungensis, sp. nov., a novel bacterium isolated from oil-polluted site produces extracellular surface activity.	Chang JS, Chou CL, Lin GH, Sheu SY, Chen WM	Syst Appl Microbiol	10.1016/j.syapm.2004.11.003	2005	*

References

#7070

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17583

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#60759 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55854

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86504

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132097.1 )

* These data were automatically processed and therefore are not curated

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Pseudoxanthomonas kaohsiungensis strain DSM 17583

Pseudoxanthomonas kaohsiungensis strain DSM 17583

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