Lysobacter capsici (DSM 19286, KCTC 22007, YC5194)

Name: Lysobacter capsici (DSM 19286, KCTC 22007, YC5194)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17493

Type strain

Strain Designation YC5194

Culture col. no. DSM 19286 KCTC 22007 YC5194

NCBI tax ID(s) 435897

Special Collections DSMZ KCTC Literature strains

History <- Y. R. Chung, National University Jinju <- YR Chung, Gyeongsang Univ.

Links

Lysobacter capsici YC5194 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from rhizosphere of pepper.

Gram-negative rod-shaped facultative anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 323975

VKM B-2533,DSM 19286,KCTC 22007

@ref 20215

Last LPSN update 2026-02-09 11:22:14

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Lysobacter

Species Lysobacter capsici

Full scientific name Lysobacter capsici Park et al. 2008

BacDive ID	Other strains from **Lysobacter capsici** (4)	Type strain
17494	L. capsici strain 10.4.5, 10.4.5, DSM 23109
130775	L. capsici 55, DSM 23110
130776	L. capsici 1.3.3, DSM 23114
130777	L. capsici 6.2.3, DSM 23113

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32305	negative	11 µm	0.4 µm	rod-shaped
67771	negative

Pigmentation

32305

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7997	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7997	positive	growth	28
32305	positive	growth	04-37
32305	positive	optimum	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32305	positive	optimum	7.25
32305	positive	growth	5.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32305	facultative anaerobe
67771	aerobe

Spore formation

32305

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32305	NaCl	positive	growth	0-2 %

Observation

67771

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
32305	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
32305	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
32305	acid phosphatase	+	3.1.3.2
32305	alkaline phosphatase	+	3.1.3.1
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
32305	catalase	+	1.11.1.6
32305	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7997	-	-	-	-	-	+	+	+	+	-	+	-	+	+	-	-	-	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7997	rhizosphere of pepper	Jinju	Republic of Korea	KOR	Asia
67771	From rhizosphere of pepper in Jinju		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF488749 (>99% sequence identity) for Lysobacter from Microbeatlas

Aquatic Samples	1340
Soil Samples	9924
Animal Samples	1424
Plant Samples	3890
Total Samples	16578

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7997	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7997	Lysobacter capsici strain YC5194 16S ribosomal RNA gene, complete sequence	EF488749	1470		435897
124043	Lysobacter capsici strain DSM 19286 16S ribosomal RNA gene, partial sequence.	KT851476	1170		435897

GC content

32305

GC-content (mol%)65.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Specialized Metabolites from Ribosome Engineered Strains of Streptomyces clavuligerus.	Shaikh AA, Nothias LF, Srivastava SK, Dorrestein PC, Tahlan K.	Metabolites	10.3390/metabo11040239	2021
	Quantitative Analysis of Lysobacter Predation.	Seccareccia I, Kost C, Nett M.	Appl Environ Microbiol	10.1128/aem.01781-15	2015
Phylogeny	Genotypic and phenotypic variation among Lysobacter capsici strains isolated from Rhizoctonia suppressive soils.	Postma J, Nijhuis EH, Yassin AF	Syst Appl Microbiol	10.1016/j.syapm.2010.03.002	2010
Phylogeny	Lysobacter capsici sp. nov., with antimicrobial activity, isolated from the rhizosphere of pepper, and emended description of the genus Lysobacter.	Park JH, Kim R, Aslam Z, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.65290-0	2008
Phylogeny	Lysobacter profundi sp. nov., isolated from freshwater sediment and reclassification of Lysobacter panaciterrae as Luteimonas panaciterrae comb. nov.	Jin CZ, Song X, Sung YJ, Jin FJ, Li T, Oh HM, Lee HG, Jin L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004253	2020
Phylogeny	Lysobacter korlensis sp. nov. and Lysobacter bugurensis sp. nov., isolated from soil.	Zhang L, Bai J, Wang Y, Wu GL, Dai J, Fang CX	Int J Syst Evol Microbiol	10.1099/ijs.0.024448-0	2010
Phylogeny	Lysobacter soli sp. nov., isolated from soil of a ginseng field.	Srinivasan S, Kim MK, Sathiyaraj G, Kim HB, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.016428-0	2009

References

#7997	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19286
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28544	IJSEM 387 2008 ( DOI 10.1099/ijs.0.65290-0 , PubMed 18218936 )
#32305	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28544
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lysobacter capsici (DSM 19286, KCTC 22007, YC5194)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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