Name: Lysobacter koreensis CCUG 55491
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17491

Type strain:

Species: Lysobacter koreensis

Culture col. no.: CCUG 55491, CIP 109107, DSM 24152, KCTC 12204, NBRC 101156, Dae 16

Strain history: CIP <- 2006, NBRC <- M. K. Kim, Kyung Hee Univ., Korea: strain Dae16

NCBI tax ID(s): 266122 (species)

SI-ID 232742

KCTC 12204, NBRC 101156, CIP 109107, DSM 24152, CCUG 55491

Section

Lysobacter koreensis CCUG 55491 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil of ginseng field.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter koreensis**
	Full Scientific Name (LPSN)	Lysobacter koreensis Lee et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31643]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #120480]	Gram stain	negative

[Ref.: #31643]	Cell length	1.5-2 µm

[Ref.: #31643]	Cell width	0.5-0.8 µm

[Ref.: #31643]	Cell shape	rod-shaped
[Ref.: #120480]	Cell shape	rod-shaped

[Ref.: #31643]	Motility	yes
[Ref.: #120480]	Motility	no

[Ref.: #60609]

Incubation period

4-5 days

[Ref.: #31643]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17515]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17515]

Culture medium growth

[Ref.: #17515]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17515]

Culture medium composition

expand / minimize

[Ref.: #36946]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36946]

Culture medium growth

[Ref.: #36946]

Culture medium composition

expand / minimize

[Ref.: #120480]

Culture medium

CIP Medium 566

[Ref.: #120480]

Culture medium growth

[Ref.: #120480]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17515]	growth	28 °C
[Ref.: #31643]	growth	20-30 °C
[Ref.: #31643]	optimum	30 °C
[Ref.: #36946]	growth	25 °C
[Ref.: #60609]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17515]	Temperature range	mesophilic
[Ref.: #31643]	Temperature range	mesophilic
[Ref.: #36946]	Temperature range	mesophilic
[Ref.: #60609]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31643]			optimum	6.8-8
[Ref.: #31643]			growth	6.8-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31643]	Oxygen tolerance	aerobe
[Ref.: #60609]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31643]

Ability of spore formation

[Ref.: #31643]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31643]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #31643]	arabinose ChEBI	+	carbon source
[Ref.: #31643]	citrate ChEBI	+	carbon source
[Ref.: #31643]	mannitol ChEBI	+	carbon source
[Ref.: #120480]	nitrate ChEBI	-	reduction
[Ref.: #120480]	nitrite ChEBI	-	reduction
[Ref.: #31643]	propionate ChEBI	+	carbon source
[Ref.: #31643]	rhamnose ChEBI	+	carbon source
[Ref.: #31643]	serine ChEBI	+	carbon source
[Ref.: #31643]	sorbitol ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #120480]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31643]	catalase	+	1.11.1.6
[Ref.: #120480]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120480]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120480]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120480]	11670	-	+	-	+	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17515]	Sample type/isolated from	soil of ginseng field
[Ref.: #17515]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #17515]	Country	Republic of Korea
[Ref.: #17515]	Country ISO 3 Code	KOR
[Ref.: #17515]	Continent	Asia

[Ref.: #60609]	Sample type/isolated from	Ginseng field
[Ref.: #60609]	Sampling date	2004
[Ref.: #60609]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #60609]	Country	Republic of Korea
[Ref.: #60609]	Country ISO 3 Code	KOR
[Ref.: #60609]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From granule sludge
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120480]	Sample type/isolated from	Ginseng field
[Ref.: #120480]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #120480]	Country	Republic of Korea
[Ref.: #120480]	Country ISO 3 Code	KOR
[Ref.: #120480]	Continent	Asia
[Ref.: #120480]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17515]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120480]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17515]	Lysobacter koreensis gene for 16S rRNA, partial sequence	AB166878	1474	ENA	266122 tax ID
[Ref.: #20218]	Lysobacter koreensis gene for 16S rRNA, partial sequence, strain: NBRC 101156	AB681400	1480	ENA	266122 tax ID	*

[Ref.: #17515]	GC-content	68.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31643]	GC-content	68.9 mol%

Availability in culture collections External links

[Ref.: #17515]

Culture collection no.

CCUG 55491, CIP 109107, DSM 24152, KCTC 12204, NBRC 101156, Dae 16

[Ref.: #86489]

SI-ID 232742

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter korlensis sp. nov. and Lysobacter bugurensis sp. nov., isolated from soil.	Zhang L, Bai J, Wang Y, Wu GL, Dai J, Fang CX	Int J Syst Evol Microbiol	10.1099/ijs.0.024448-0	2010	*
Phylogeny	Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea.	Weon HY, Kim BY, Kim MK, Yoo SH, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64473-0	2007	*
Phylogeny	Lysobacter koreensis sp. nov., isolated from a ginseng field.	Lee JW, Im WT, Kim MK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.63955-0	2006	*

References

#17515

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24152

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31643

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27926 (see below)

#36946 ; Curators of the CIP;
#60609 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55491
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#86489

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232742.1 )

#120480 Collection of Institut Pasteur ; Curators of the CIP; CIP 109107

#27926

IJSEM 231 2006 ( DOI 10.1099/ijs.0.63955-0 , PubMed 16403891 )

* These data were automatically processed and therefore are not curated

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