Lysobacter yangpyeongensis (DSM 17635, CIP 109293, CCUG 55493)

Name: Lysobacter yangpyeongensis (DSM 17635, CIP 109293, CCUG 55493)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17485

Type strain

Strain Designation GH19-3

Culture col. no. DSM 17635 CIP 109293 CCUG 55493 KACC 11407 GH19-3

NCBI tax ID(s) 346182

Special Collections DSMZ CCUG CIP Literature strains

History <- S.-W. Kwon <- H.-Y. Weon; GH19-3 CIP <- 2006, DSMZ <- S.W. Kwon, KACC <- H.Y. Weon, RDA, Suwon, Korea: strain GH19-3

Links

Lysobacter yangpyeongensis GH19-3 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from greenhouse soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290983

DSM 17635,KACC 11407,CIP 109293

@ref 20215

Last LPSN update 2026-02-09 11:22:14

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Lysobacter

Species Lysobacter yangpyeongensis

Full scientific name Lysobacter yangpyeongensis Weon et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31709	negative	03-04 µm	0.4-0.6 µm	rod-shaped
124009	negative			rod-shaped

Colony morphology

60611

Incubation period2 days

Pigmentation

31709

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7099	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
33288	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
124009	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7099	positive	growth	28
31709	positive	growth	15-40
31709	positive	optimum	30-40
33288	positive	growth	30
60611	positive	growth	30

Culture pH

@ref	Ability	Type	PH
31709	positive	optimum	07-08
31709	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31709	aerobe
60611	aerobe

Spore formation

31709

Spore formationno

Observation

31709

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31709	37054 ChEBI	3-hydroxybutyrate	+	carbon source
31709	28087 ChEBI	glycogen	+	carbon source
124009	17632 ChEBI	nitrate	-	reduction
124009	16301 ChEBI	nitrite	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
124009	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
124009	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31709	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
124009	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
124009	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
124009	tween esterase	+
124009	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
124009	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Greenhouse
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7099	greenhouse soil	Daejeon	Republic of Korea	KOR	Asia
60611	Greenhouse soil		Republic of Korea	KOR	Asia
124009	Environment, Greenhouse soil cultivated with lettuce	Suwon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ191179 (>99% sequence identity) for Lysobacter yangpyeongensis from Microbeatlas

Aquatic Samples	77
Soil Samples	1148
Animal Samples	64
Plant Samples	153
Total Samples	1442

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7099	1	Risk group (German classification) According to TRBA 466
124009	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265574v1 assembly for Lysobacter yangpyeongensis KACC 11407	scaffold	GCA_042655745	346182	50.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7099	Lysobacter yangpyeongensis strain GH19-3 16S ribosomal RNA gene, partial sequence	DQ191179	1463		346182

GC content

@ref	GC-content (mol%)	Method
7099	67.3	high performance liquid chromatography (HPLC)
31709	67.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter terrestris sp. nov., isolated from soil.	Woo CY, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005204	2022
Phylogeny	Lysobacter humi sp. nov., a bacterium isolated from rice field.	Akter S, Huq MA, Yi TH	Arch Microbiol	10.1007/s00203-016-1262-0	2016
Phylogeny	Lysobacter rhizophilus sp. nov., isolated from rhizosphere soil of mugunghwa, the national flower of South Korea.	Yan ZF, Trinh H, Moya G, Lin P, Li CT, Kook MC, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001422	2016
Phylogeny	Lysobacter terricola sp. nov., isolated from greenhouse soil.	Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.000893	2016
Phylogeny	Lysobacter tyrosinelyticus sp. nov. isolated from Gyeryongsan national park soil.	Du J, Singh H, Ngo HT, Won K, Kim KY, Yi TH	J Microbiol	10.1007/s12275-015-4729-9	2015
Phylogeny	Lysobacter fragariae sp. nov. and Lysobacter rhizosphaerae sp. nov. isolated from rhizosphere of strawberry plant.	Singh H, Du J, Ngo HT, Won K, Yang JE, Kim KY, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0439-x	2015
Phylogeny	Lysobacter terrae sp. nov. isolated from Aglaia odorata rhizosphere soil.	Ngo HTT, Won K, Du J, Son HM, Park Y, Kook M, Kim KY, Jin FX, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.067397-0	2014
Phylogeny	Lysobacter oryzae sp. nov., isolated from the rhizosphere of rice (Oryza sativa L.).	Aslam Z, Yasir M, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.000588-0	2009
Phylogeny	Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea.	Weon HY, Kim BY, Kim MK, Yoo SH, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64473-0	2007
Phylogeny	Two novel species, Lysobacter daejeonensis sp. nov. and Lysobacter yangpyeongensis sp. nov., isolated from Korean greenhouse soils.	Weon HY, Kim BY, Baek YK, Yoo SH, Kwon SW, Stackebrandt E, Go SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64095-0	2006

References

#7099	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17635
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27986	IJSEM 947 2006 ( DOI 10.1099/ijs.0.64095-0 , PubMed 16627636 )
#31709	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27986
#33288	; Curators of the CIP;
#60611	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55493
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124009	Collection of Institut Pasteur ; Curators of the CIP; CIP 109293
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lysobacter yangpyeongensis (DSM 17635, CIP 109293, CCUG 55493)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042655745

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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