Name: Luteimonas aquatica RIB1-20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17469

Type strain:

Species: Luteimonas aquatica

Strain Designation: RIB1-20

Culture col. no.: DSM 22088, BCRC 17731, LMG 24212

Strain history: <- LMG <- J.-H. Chou and et al., Department of soil and Environmental Sciences, Taichung, Taiwan

NCBI tax ID(s): 450364 (species)

SI-ID 308901

LMG 24212, BCRC 17731, DSM 22088

Special Collections

Section

Luteimonas aquatica RIB1-20 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from sample from freshwater spring.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	**Luteimonas aquatica**
	Full Scientific Name (LPSN)	Luteimonas aquatica Chou et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32556]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.009

[Ref.: #32556]	Cell length	0.8-1 µm

[Ref.: #32556]	Cell width	0.5 µm

[Ref.: #32556]	Cell shape	rod-shaped

[Ref.: #32556]	Motility	no

[Ref.: #32556]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16135]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16135]

Culture medium growth

[Ref.: #16135]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16135]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16135]	growth	28 °C
[Ref.: #32556]	growth	15-37 °C
[Ref.: #32556]	optimum	25 °C

	pH	Kind of pH		pH
[Ref.: #32556]			optimum	7
[Ref.: #32556]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32556]

Oxygen tolerance

aerobe

[Ref.: #32556]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %92.382

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32556]		NaCl		growth	0-3	%

[Ref.: #32556]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32556]	acetate ChEBI	+	carbon source
[Ref.: #32556]	alanine ChEBI	+	carbon source
[Ref.: #32556]	aspartate ChEBI	+	carbon source
[Ref.: #32556]	dextrin ChEBI	+	carbon source
[Ref.: #32556]	formate ChEBI	+	carbon source
[Ref.: #32556]	fructose ChEBI	+	carbon source
[Ref.: #32556]	glucose ChEBI	+	carbon source
[Ref.: #32556]	glutamate ChEBI	+	carbon source
[Ref.: #32556]	glycogen ChEBI	+	carbon source
[Ref.: #32556]	lactose ChEBI	+	carbon source
[Ref.: #32556]	malonate ChEBI	+	carbon source
[Ref.: #32556]	maltose ChEBI	+	carbon source
[Ref.: #32556]	mannose ChEBI	+	carbon source
[Ref.: #32556]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32556]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32556]	ornithine ChEBI	+	carbon source
[Ref.: #32556]	proline ChEBI	+	carbon source
[Ref.: #32556]	serine ChEBI	+	carbon source
[Ref.: #32556]	sorbitol ChEBI	+	carbon source
[Ref.: #32556]	sucrose ChEBI	+	carbon source
[Ref.: #32556]	threonine ChEBI	+	carbon source
[Ref.: #32556]	trehalose ChEBI	+	carbon source
[Ref.: #32556]	tween 40 ChEBI	+	carbon source
[Ref.: #32556]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32556]		catalase	+	1.11.1.6
[Ref.: #32556]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16135]	Sample type/isolated from	sample from freshwater spring
[Ref.: #16135]	Geographic location (country and/or sea, region)	southern Taiwan, Kaohsiung County
[Ref.: #16135]	Country	Taiwan, Province of China
[Ref.: #16135]	Country ISO 3 Code	TWN
[Ref.: #16135]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF626688 (>99% sequence identity) for Lysobacter from Microbeatlas

Aquatic Samples	91
Soil Samples	57
Animal Samples	21
Plant Samples	61
Total Samples	230

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16135]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16135]	Luteimonas aquatica strain RIB1-20 16S ribosomal RNA gene, partial sequence	EF626688	1481	GenBank ENA	450364 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteimonas aquatica RIB1-20	GCA_022662575	scaffold	GenBank ENA	450364 tax ID	*

[Ref.: #16135]

GC-content

70.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteimonas aquatica RIB1-20 NCBI: GCA_022662575.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.009	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.649	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.61	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.382	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.782	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	54.837	yes

Availability in culture collections External links

[Ref.: #16135]

Culture collection no.

DSM 22088, BCRC 17731, LMG 24212

[Ref.: #86465]

SI-ID 308901

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description and genome analysis of Luteimonas viscosa sp. nov., a novel bacterium isolated from soil of a sunflower field.	Chen Y, Zhang Y, Xin D, Luo X, Pang H, Li Y, Zhang J	Antonie Van Leeuwenhoek	10.1007/s10482-022-01730-y	2022	*
Phylogeny	Luteimonas wenzhouensis Sp. Nov., A Chitinolytic Bacterium Isolated from a Landfill Soil.	Zhou J, Chen J, Ma J, Xu N, Xin F, Zhang W, Zhang H, Dong W, Jiang M	Curr Microbiol	10.1007/s00284-020-02293-9	2020	*
Phylogeny	Lysobacter profundi sp. nov., isolated from freshwater sediment and reclassification of Lysobacter panaciterrae as Luteimonas panaciterrae comb. nov.	Jin CZ, Song X, Sung YJ, Jin FJ, Li T, Oh HM, Lee HG, Jin L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004253	2020	*
Phylogeny	Luteimonas soli sp. nov., isolated from farmland soil.	Wang X, Yang HX, Zhang YK, Zhu SJ, Liu XW, Zhang H, Zhang CF, Zhao CR, Hu G, Hong Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.000652	2015	*
Phylogeny	Luteimonas huabeiensis sp. nov., isolated from stratum water.	Wu G, Liu Y, Li Q, Du H, You J, Li H, Ke C, Zhang X, Yu J, Zhao T	Int J Syst Evol Microbiol	10.1099/ijs.0.049718-0	2013	*
Phylogeny	Luteimonas vadosa sp. nov., isolated from seashore sediment.	Romanenko LA, Tanaka N, Svetashev VI, Kurilenko VV, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.043273-0	2012	*
Phylogeny	Luteimonas cucumeris sp. nov., isolated a from cucumber leaf.	Sun ZB, Zhang H, Yuan XF, Wang YX, Feng DM, Wang YH, Feng YJ	Int J Syst Evol Microbiol	10.1099/ijs.0.037549-0	2012	*
Phylogeny	Luteimonas aquatica sp. nov., isolated from fresh water from Southern Taiwan.	Chou JH, Cho NT, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65684-0	2008	*

References

#16135

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22088

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32556

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28774 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86465

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308901.1 )

#28774

IJSEM 2051 2008 ( DOI 10.1099/ijs.0.65684-0 , PubMed 18768603 )

* These data were automatically processed and therefore are not curated

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