Name: Dyella terrae JS14-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17458

Type strain:

Species: Dyella terrae

Strain Designation: JS14-6

Culture col. no.: DSM 23153, JCM 15424, KACC 12748

Strain history: S.-W. Kwon JS14-6.

NCBI tax ID(s): 522259 (species)

SI-ID 403342

DSM 23153

Section

Dyella terrae JS14-6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil cultivated with Citrus species.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Dyella*
	Species	**Dyella terrae**
	Full Scientific Name (LPSN)	Dyella terrae Weon et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29047]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.979

[Ref.: #29047]	Cell length	3 µm

[Ref.: #29047]	Cell width	0.45 µm

[Ref.: #29047]	Cell shape	rod-shaped

[Ref.: #29047]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.369

[Ref.: #29047]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16736]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #16736]

Culture medium growth

[Ref.: #16736]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16736]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16736]	growth	28 °C
[Ref.: #29047]	growth	10-35 °C
[Ref.: #29047]	optimum	29 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #16736]	Temperature range	mesophilic
[Ref.: #29047]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29047]			optimum	6.5
[Ref.: #29047]			growth	04-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29047]

Oxygen tolerance

aerobe

[Ref.: #29047]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29047]		NaCl		growth	0-3	%
[Ref.: #29047]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29047]	maltose ChEBI	+	carbon source
[Ref.: #29047]	mannose ChEBI	+	carbon source
[Ref.: #29047]	serine ChEBI	+	carbon source
[Ref.: #29047]	tween 80 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29047]		acid phosphatase	+	3.1.3.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16736]	Sample type/isolated from	soil cultivated with Citrus species
[Ref.: #16736]	Host species	Citrus
[Ref.: #16736]	Geographic location (country and/or sea, region)	Jeju island
[Ref.: #16736]	Country	Republic of Korea
[Ref.: #16736]	Country ISO 3 Code	KOR
[Ref.: #16736]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil cultivated with Citrus species
[Ref.: #67770]	Host species	Citrus sp.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU604273 (>99% sequence identity) for Dyella from Microbeatlas

Aquatic Samples	133
Soil Samples	980
Animal Samples	188
Plant Samples	138
Total Samples	1439

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16736]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16736]	Dyella terrae strain JS14-6 16S ribosomal RNA gene, partial sequence	EU604273	1423	ENA	522259 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dyella terrae KACC 12748	GCA_004322705	contig	GenBank	522259 tax ID
[Ref.: #66792]	Dyella terrae strain KACC 12748	522259.3	wgs	PATRIC	522259 tax ID	*
[Ref.: #66792]	Dyella terrae KACC 12748	2894703127	draft	JGI IMG/M	522259 tax ID	*

[Ref.: #16736]	GC-content	64.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29047]	GC-content	64 mol%
[Ref.: #67770]	GC-content	64 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dyella terrae strain KACC 12748 PATRIC: 522259.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dyella terrae strain KACC 12748 PATRIC: 522259.3
[Ref.: #69480]	gram-positive	no	98.747	no
[Ref.: #69480]	anaerobic	no	98.627	yes
[Ref.: #69480]	halophile	no	95.055	no
[Ref.: #69480]	spore-forming	no	94.311	no
[Ref.: #69480]	glucose-util	yes	88.818	no
[Ref.: #69480]	aerobic	yes	90.47	yes
[Ref.: #69480]	thermophile	no	99.428	no
[Ref.: #69480]	motile	yes	91.125	no
[Ref.: #69480]	flagellated	no	67.646	no
[Ref.: #69480]	glucose-ferment	no	90.652	no

Availability in culture collections External links

[Ref.: #16736]

Culture collection no.

DSM 23153, JCM 15424, KACC 12748

[Ref.: #86454]

SI-ID 403342

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella telluris sp. nov. and Dyella acidiphila sp. nov., isolated from forest soil of Dinghushan Biosphere Reserve, China.	Huang T, Fu JC, Dong SH, Zhang QM, Wu TT, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004985	2021	*
Phylogeny	Dyella amyloliquefaciens sp. nov., isolated from forest soil.	Fu JC, Gao ZH, Wu TT, Chen MH, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003660	2019	*
Phylogeny	Frateuria defendens sp. nov., bacterium isolated from the yellows grapevine's disease vector Hyalesthes obsoletus.	Lidor O, Santos-Garcia D, Mozes-Daube N, Naor V, Cohen E, Iasur-Kruh L, Bahar O, Zchori-Fein E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003305	2019	*
Phylogeny	Dyella solisilvae sp. nov., isolated from mixed pine and broad-leaved forest soil.	Gao ZH, Yang Z, Chen MH, Huang ZJ, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003218	2019	*
Phylogeny	Dyella kyungheensis sp. nov., isolated from soil of a cornus fruit field.	Son HM, Yang JE, Yi EJ, Park Y, Won KH, Kim JH, Han CK, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.051185-0	2013	*
Phylogeny	Dyella jiangningensis sp. nov., a gamma-proteobacterium isolated from the surface of potassium-bearing rock.	Zhao F, Guo XQ, Wang P, He LY, Huang Z, Sheng XF	Int J Syst Evol Microbiol	10.1099/ijs.0.048470-0	2013	*
Phylogeny	Dyella soli sp. nov. and Dyella terrae sp. nov., isolated from soil.	Weon HY, Anandham R, Kim BY, Hong SB, Jeon YA, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.004838-0	2009	*

References

#16736

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23153

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29047

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25477 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86454

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403342.1 )

#25477

IJSEM 1685 2009 ( DOI 10.1099/ijs.0.004838-0 , PubMed 19542132 )

* These data were automatically processed and therefore are not curated

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Dyella terrae strain KACC 12748

Dyella terrae strain KACC 12748

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