Dokdonella soli (DSM 23099, JCM 15421, KACC 12741)

Name: Dokdonella soli (DSM 23099, JCM 15421, KACC 12741)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17452

Type strain

Strain Designation KIS28-6

Culture col. no. DSM 23099 JCM 15421 KACC 12741 KIS28-6

NCBI tax ID(s) 529810

Special Collections DSMZ JCM Literature strains

History <- KACC <- H.-Y. Weon, Natl. Inst. Horticultural and Medicinal Crop Sci., RDA, Republic of Korea; KIS28-6 S.-W. Kwon KIS28-6.

Links

Dokdonella soli KIS28-6 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404435

JCM 15421,DSM 23099

@ref 20215

Last LPSN update 2026-02-09 11:22:13

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Dokdonella

Species Dokdonella soli

Full scientific name Dokdonella soli Yoo et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29066	negative	2.95 µm	0.45 µm	rod-shaped

Pigmentation

29066

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16570	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16570	positive	growth	30
29066	positive	growth	05-35
29066	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
29066	positive	optimum	6.5
29066	positive	growth	5.0-8.0

Physiology and metabolism

Oxygen tolerance

29066

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29066	NaCl	positive	growth	0-1.0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29066	22599 ChEBI	arabinose	+	carbon source
29066	5291 ChEBI	gelatin	+	carbon source
29066	17716 ChEBI	lactose	+	carbon source
29066	17632 ChEBI	nitrate	+	reduction
29066	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29066	acid phosphatase	+	3.1.3.2
29066	alkaline phosphatase	+	3.1.3.1
29066	catalase	+	1.11.1.6
29066	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
16570	soil	island in the Sea of Japan (East Sea), Ulleung (37° 30' N 130° 52' E)	Republic of Korea	KOR	Asia	37.5	130.867 37.5/130.867
67770	Soil	Ulleung	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16570	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265546v1 assembly for Dokdonella soli KACC 12741	contig	GCA_042655465	529810	67.4
124043	ASM3952317v1 assembly for Dokdonella soli JCM 15421	scaffold	GCA_039523175	529810	66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16570	Dokdonella sp. KIS28-6 16S ribosomal RNA gene, partial sequence	EU685334	1450		529810

GC content

@ref	GC-content (mol%)	Method
16570	73.0	high performance liquid chromatography (HPLC)
29066	73
67770	73	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dokdonella immobilis sp. nov., isolated from a batch reactor for the treatment of triphenylmethane dye effluent.	Liu Y, Jin JH, Liu HC, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.042002-0	2012
Phylogeny	Dokdonella kunshanensis sp. nov., isolated from activated sludge, and emended description of the genus Dokdonella.	Li Y, Zhang J, Chen Q, Yang G, Cai S, He J, Zhou S, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.041798-0	2012
Phylogeny	Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil.	Yoo SH, Weon HY, Anandham R, Kim BY, Hong SB, Jeon YA, Koo BS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.005348-0	2009

References

#16570	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23099
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25496	IJSEM 1965 2009 ( DOI 10.1099/ijs.0.005348-0 , PubMed 19567557 )
#29066	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25496
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dokdonella soli (DSM 23099, JCM 15421, KACC 12741)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042655465

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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