Name: Dokdonella soli KIS28-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17452

Type strain:

Species: Dokdonella soli

Strain Designation: KIS28-6

Culture col. no.: DSM 23099, JCM 15421, KACC 12741

Strain history: S.-W. Kwon KIS28-6.

NCBI tax ID(s): 529810 (species)

Section

Dokdonella soli KIS28-6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Dokdonella*
	Species	**Dokdonella soli**
	Full Scientific Name (PNU)	Dokdonella soli Yoo et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29066]	Gram stain	negative
[Ref.: #29066]	Cell length	2.95 µm
[Ref.: #29066]	Cell width	0.45 µm
[Ref.: #29066]	Cell shape	rod-shaped
[Ref.: #29066]	Motility	no

[Ref.: #29066]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16570]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16570]

Culture medium growth

[Ref.: #16570]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16570]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16570]	growth	30 °C
[Ref.: #29066]	growth	05-35 °C
[Ref.: #29066]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #16570]	Temperature range	mesophilic
[Ref.: #29066]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29066]			optimum	6.5
[Ref.: #29066]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29066]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29066]		NaCl		growth	0-1.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29066]	arabinose ChEBI	+	carbon source
[Ref.: #29066]	gelatin ChEBI	+	carbon source
[Ref.: #29066]	lactose ChEBI	+	carbon source
[Ref.: #29066]	nitrate ChEBI	+	reduction
[Ref.: #29066]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29066]	acid phosphatase	+	3.1.3.2
[Ref.: #29066]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29066]	catalase	+	1.11.1.6
[Ref.: #29066]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16570]	Sample type/isolated from	soil
[Ref.: #16570]	Geographic location (country and/or sea, region)	island in the Sea of Japan (East Sea), Ulleung (37° 30' N 130° 52' E)
[Ref.: #16570]	Country	Republic of Korea
[Ref.: #16570]	Country ISO 3 Code	KOR
[Ref.: #16570]	Continent	Asia
[Ref.: #16570]	Geographic location	37.5000°/130.8670°

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ulleung
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16570]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16570]	Dokdonella sp. KIS28-6 16S ribosomal RNA gene, partial sequence	EU685334	1450	ENA	529810 tax ID

[Ref.: #16570]	GC-content	73.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29066]	GC-content	73 mol%
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16570]

Culture collection no.

DSM 23099, JCM 15421, KACC 12741

[Ref.: #20218]

Associated Passport(s) in StrainInfo

844525, 844526

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dokdonella immobilis sp. nov., isolated from a batch reactor for the treatment of triphenylmethane dye effluent.	Liu Y, Jin JH, Liu HC, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.042002-0	2012	*
Phylogeny	Dokdonella kunshanensis sp. nov., isolated from activated sludge, and emended description of the genus Dokdonella.	Li Y, Zhang J, Chen Q, Yang G, Cai S, He J, Zhou S, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.041798-0	2012	*
Phylogeny	Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil.	Yoo SH, Weon HY, Anandham R, Kim BY, Hong SB, Jeon YA, Koo BS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.005348-0	2009	*

References

#16570

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23099

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29066

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25496 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#25496

IJSEM 1965 2009 ( DOI 10.1099/ijs.0.005348-0 , PubMed 19567557 )

* These data were automatically processed and therefore are not curated

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