Pedobacter steynii CIP 109507 is an obligate aerobe, Gram-negative, rod-shaped prokaryote that was isolated from Environment, Fresh water.
Gram-negative rod-shaped obligate aerobe| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Bacteroidota |
| Class Sphingobacteriia |
| Order Sphingobacteriales |
| Family Sphingobacteriaceae |
| Genus Pedobacter |
| Species Pedobacter steynii |
| Full scientific name Pedobacter steynii Muurholm et al. 2007 |
| BacDive ID | Other strains from Pedobacter steynii (1) | Type strain |
|---|---|---|
| 14109 | P. steynii WB2.3-45, DSM 19110 (type strain) |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 123318 | negative | rod-shaped |
| @ref | Name | Growth | Medium link | |
|---|---|---|---|---|
| 123318 | CIP Medium 566 | Medium recipe at CIP |
| 123318 | Oxygen toleranceobligate aerobe |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123318 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123318 | oxidase | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 123318 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|
| 123318 | Environment, Fresh water | Westerhöfer Bach, Harz mountains | Germany | DEU | Europe | 2005 |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 123318 | 1 | Risk group (French classification) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Pathogenicity | Effect of heavy metals on the performance and bacterial profiles of activated sludge in a semi-continuous reactor. | Bhat SA, Cui G, Li W, Wei Y, Li F. | Chemosphere | 10.1016/j.chemosphere.2019.125035 | 2020 | |
| Insight into antimicrobial resistance at a new beef cattle feedlot in western Canada. | Kos D, Schreiner B, Thiessen S, McAllister T, Jelinski M, Ruzzini A. | mSphere | 10.1128/msphere.00317-23 | 2023 | ||
| Culture-dependent and -independent analyses reveal unique community structure and function in the external mycelial cortices of Ophiocordyceps sinensis. | Li N, Li J, Feng Z, Wu Z, Gao Q, Wang J, Zhang Y, Chen SL, Xing R. | BMC Microbiol | 10.1186/s12866-025-03793-z | 2025 | ||
| Metabolism | Characterization of Endofungal Bacteria and Their Role in the Ectomycorrhizal Fungus Helvella bachu. | Wei C, Liu M, Meng G, Wang M, Zhou X, Xu J, Hu J, Zhang L, Dong C. | J Fungi (Basel) | 10.3390/jof10120889 | 2024 | |
| Agronomic strategies to enhance the early vigor and yield of maize. Part I: the role of seed applied biostimulant, hybrid and starter fertilization on rhizosphere bacteria profile and diversity. | Ujvari G, Capo L, Grassi A, Cristani C, Pagliarani I, Turrini A, Blandino M, Giovannetti M, Agnolucci M. | Front Plant Sci | 10.3389/fpls.2023.1240310 | 2023 | ||
| Phylogeny | Selective Isolation of Multidrug-Resistant Pedobacter spp., Producers of Novel Antibacterial Peptides. | Bjerketorp J, Levenfors JJ, Nord C, Guss B, Oberg B, Broberg A. | Front Microbiol | 10.3389/fmicb.2021.642829 | 2021 | |
| Production and characterization of a new detergent-stable keratinase expressed by Pedobacter sp. 3.14.7, a novel Antarctic psychrotolerant keratin-degrading bacterium. | Rios P, Bezus B, Cavalitto S, Cavello I. | J Genet Eng Biotechnol | 10.1186/s43141-022-00356-x | 2022 | ||
| The soil-borne white root rot pathogen Rosellinia necatrix expresses antimicrobial proteins during host colonization. | Chavarro-Carrero EA, Snelders NC, Torres DE, Kraege A, Lopez-Moral A, Petti GC, Punt W, Wieneke J, Garcia-Velasco R, Lopez-Herrera CJ, Seidl MF, Thomma BPHJ. | PLoS Pathog | 10.1371/journal.ppat.1011866 | 2024 | ||
| Phylogeny | The Response of a 16S Ribosomal RNA Gene Fragment Amplified Community to Lead, Zinc, and Copper Pollution in a Shanghai Field Trial. | Kou S, Vincent G, Gonzalez E, Pitre FE, Labrecque M, Brereton NJB. | Front Microbiol | 10.3389/fmicb.2018.00366 | 2018 | |
| Plant-fed versus chemicals-fed rhizobacteria of Lucerne: Plant-only teabags culture media not only increase culturability of rhizobacteria but also recover a previously uncultured Lysobacter sp., Novosphingobium sp. and Pedobacter sp. | Hegazi NA, Sarhan MS, Fayez M, Patz S, Murphy BR, Ruppel S. | PLoS One | 10.1371/journal.pone.0180424 | 2017 | ||
| Phylogeny | Pedobacter duraquae sp. nov., Pedobacter westerhofensis sp. nov., Pedobacter metabolipauper sp. nov., Pedobacter hartonius sp. nov. and Pedobacter steynii sp. nov., isolated from a hard-water rivulet. | Muurholm S, Cousin S, Pauker O, Brambilla E, Stackebrandt E. | Int J Syst Evol Microbiol | 10.1099/ijs.0.65166-0 | 2007 | |
| Genetics | Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana. | Qi SS, Cnockaert M, Carlier A, Vandamme P. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004667 | 2019 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #68382 | Automatically annotated from API zym . |
| #123318 | Collection of Institut Pasteur ; Curators of the CIP; CIP 109507 |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive174175.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data