Name: Ancylobacter koreensis DSM 18406
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17416

Type strain:

Species: Ancylobacter koreensis

Culture col. no.: DSM 18406, IAM 15215, KCTC 12212, NBRC 100963, Jip 08, JCM 21669, CIP 109384

Strain history: CIP <- 2006, IAM <- W.-T. Im: strain Jip08

NCBI tax ID(s): 266121 (species)

SI-ID 232746

KCTC 12212, IAM 15215, NBRC 100963, JCM 21669, DSM 18406, CIP 109384

Section

Ancylobacter koreensis DSM 18406 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from stem of rice straw.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Ancylobacter*
	Species	**Ancylobacter koreensis**
	Full Scientific Name (LPSN)	Ancylobacter koreensis (Im et al. 2006) Doronina et al. 2023

Synonym

Starkeya koreensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #120489]	Gram stain	negative

[Ref.: #120489]	Cell shape	rod-shaped

[Ref.: #120489]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7542]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7542]

Culture medium growth

[Ref.: #7542]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7542]

Culture medium composition

expand / minimize

[Ref.: #37537]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #37537]

Culture medium growth

[Ref.: #37537]

Culture medium composition

expand / minimize

[Ref.: #120489]

Culture medium

CIP Medium 566

[Ref.: #120489]

Culture medium growth

[Ref.: #120489]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7542]	growth	30 °C
[Ref.: #37537]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #7542]	Temperature range	mesophilic
[Ref.: #37537]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120489]		nitrate ChEBI	-	reduction
[Ref.: #120489]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120489]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120489]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120489]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120489]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120489]	11829	-	-	+	+	-	+	+	-	+	-	-	-	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7542]	Sample type/isolated from	stem of rice straw
[Ref.: #7542]	Geographic location (country and/or sea, region)	Daejon
[Ref.: #7542]	Country	Republic of Korea
[Ref.: #7542]	Country ISO 3 Code	KOR
[Ref.: #7542]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rice straw
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From rotten rice straw
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120489]	Sample type/isolated from	Food, Rice straw
[Ref.: #120489]	Country	Republic of Korea
[Ref.: #120489]	Country ISO 3 Code	KOR
[Ref.: #120489]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681299 (>99% sequence identity) for Starkeya from Microbeatlas

Aquatic Samples	773
Soil Samples	522
Animal Samples	291
Plant Samples	465
Total Samples	2051

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7542]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120489]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7542]	Starkeya koreensis gene for 16S rRNA, partial sequence	AB166877	1406	ENA	266121 tax ID
[Ref.: #20218]	Starkeya koreensis gene for 16S rRNA, partial sequence, strain: NBRC 100963	AB681299	1410	ENA	266121 tax ID	*

[Ref.: #7542]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7542]

Culture collection no.

DSM 18406, IAM 15215, KCTC 12212, NBRC 100963, Jip 08, JCM 21669, CIP 109384

[Ref.: #86412]

SI-ID 232746

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Starkeya koreensis sp. nov., isolated from rice straw.	Im WT, Aslam Z, Lee M, Ten LN, Yang DC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64093-0	2006	*
Phylogeny	Ancylobacter moscoviensis sp. nov., novel facultatively methylotrophic bacteria from activated sludge and the reclassification of Starkeya novella (Starkey 1934) Kelly et al. 2000 as Ancylobacter novellus comb. nov., Starkeya koreensis Im et al. 2006 as Ancylobacter koreensis comb.nov., Angulomicrobium tetraedrale Vasil'eva et al. 1986 as Ancylobacter tetraedralis comb. nov., Angulomicrobium amanitiforme Fritz et al. 2004 as Ancylobacter amanitiformis comb. nov., and Methylorhabdus multivorans Doronina et al. 1996 as Ancylobacter multivorans comb. nov., and emended description of the genus Ancylobacter.	Doronina NV, Chemodurova AA, Grouzdev DS, Koziaeva VV, Agafonova NV, Shi W, Wu L, Kaparullina EN	Antonie Van Leeuwenhoek	10.1007/s10482-022-01788-8	2022	*

References

#7542

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18406

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37537 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86412

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232746.1 )

#120489 Collection of Institut Pasteur ; Curators of the CIP; CIP 109384
* These data were automatically processed and therefore are not curated

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