Name: Williamsia phyllosphaerae C7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17380

Type strain:

Species: Williamsia phyllosphaerae

Strain Designation: C7

Culture col. no.: DSM 45526, CCM 7855, CCUG 60465, JCM 19126

Strain history: CCUG 60465 <-- P. Kämpfer C7.

NCBI tax ID(s): 885042 (species)

SI-ID 407825

DSM 45526, CCUG 60465

Special Collections

Section

When using BacDive for research please cite our paper

Williamsia phyllosphaerae C7 is an aerobe, mesophilic bacterium that was isolated from leaf surface of Trifolium repens.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Williamsia*
	Species	**Williamsia phyllosphaerae**
	Full Scientific Name (LPSN)	Williamsia phyllosphaerae Kämpfer et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %93.123
[Ref.: #125439]	Gram stain	positive Confidence in %98.3

[Ref.: #125438]	Motility	no Confidence in %90

[Ref.: #62320]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17429]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #17429]

Culture medium growth

[Ref.: #17429]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17429]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17429]	growth	28 °C
[Ref.: #62320]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62320]	Oxygen tolerance	aerobe
[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %91.681
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.3

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17429]	Sample type/isolated from	leaf surface of Trifolium repens
[Ref.: #17429]	Host species	Trifolium repens
[Ref.: #17429]	Geographic location (country and/or sea, region)	Thuringia, biodiversity exploratory Hainich-Dün
[Ref.: #17429]	Country	Germany
[Ref.: #17429]	Country ISO 3 Code	DEU
[Ref.: #17429]	Continent	Europe

[Ref.: #62320]	Sample type/isolated from	Leaf surface (Trifolium repens)
[Ref.: #62320]	Sampling date	2008-07-04
[Ref.: #62320]	Geographic location (country and/or sea, region)	Hainich-Dün (Thüringen)
[Ref.: #62320]	Country	Germany
[Ref.: #62320]	Country ISO 3 Code	DEU
[Ref.: #62320]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Surface of leaves of Trifolium repens from a meadow
[Ref.: #67770]	Host species	Trifolium repens
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainich-Dün region
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR691321 (>99% sequence identity) for Williamsia from Microbeatlas

Aquatic Samples	2300
Soil Samples	3768
Animal Samples	7264
Plant Samples	1064
Total Samples	14396

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17429]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17429]	Williamsia phyllosphaerae partial 16S rRNA gene, type strain C7T	FR691321	1372	GenBank ENA	885042 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Williamsia phyllosphaerae CCM 7855	GCA_014635305	contig	GenBank ENA	885042 tax ID	*
[Ref.: #66792]	Williamsia phyllosphaerae strain CCM 7855	885042.3	wgs	PATRIC	885042 tax ID	*

[Ref.: #17429]	GC-content	65 mol%
[Ref.: #67770]	GC-content	65 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Williamsia phyllosphaerae strain CCM 7855 PATRIC: 885042.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.123	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.384	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	91.681	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	58.641	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.9	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Williamsia phyllosphaerae CCM 7855 NCBI: GCA_014635305
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	68.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	69.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	98.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.3

Availability in culture collections External links

[Ref.: #17429]

Culture collection no.

DSM 45526, CCM 7855, CCUG 60465, JCM 19126

[Ref.: #86379]

SI-ID 407825

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Williamsia phyllosphaerae sp. nov., isolated from the surface of Trifolium repens leaves.	Kampfer P, Wellner S, Lohse K, Lodders N, Martin K	Int J Syst Evol Microbiol	10.1099/ijs.0.029322-0	2010	*

References

#17429

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45526

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62320 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60465

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86379

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407825.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Williamsia phyllosphaerae strain CCM 7855

Williamsia phyllosphaerae CCM 7855

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