Name: Victivallis vadensis Cello
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17370

Type strain:

Species: Victivallis vadensis

Strain Designation: Cello

Culture col. no.: DSM 14823, ATCC BAA-548, CCUG 54625

Strain history: <- C. M. Plugge, Wageningen University, Laboratory of Microbiology, Netherlands; Cello <- C. M. Plugge {2001}

NCBI tax ID(s): 172901 (species)

SI-ID 101057

ATCC BAA-548, DSM 14823, CCUG 54625

Other strains from Victivallis vadensis

V. vadensis COR2-253-APC-1A, DSM 107450

Section

Victivallis vadensis Cello is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from fecal sample of healthy Dutch man.

coccus-shaped
Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Lentisphaerota*
	Class	*Lentisphaeria*
	Order	*Victivallales*
	Family	*Victivallaceae*
	Genus	*Victivallis*
	Species	**Victivallis vadensis**
	Full Scientific Name (LPSN)	Victivallis vadensis Zoetendal et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #43386]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #43386]	Cell width	0.5-1.3 µm

[Ref.: #43386]	Cell shape	coccus-shaped

[Ref.: #43386]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5561]

Culture medium

SYNTROPHOBACTER (MPOB) MEDIUM (DSMZ Medium 684)

[Ref.: #5561]

Culture medium growth

[Ref.: #5561]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5561]

Culture medium composition

expand / minimize

[Ref.: #43386]

Culture medium

Bicarbonate-buffered mineral salts medium with cellobiose

[Ref.: #43386]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #5561]			growth	37 °C
[Ref.: #60267]			growth	37 °C

[Ref.: #5561]	Temperature range	mesophilic
[Ref.: #60267]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5561]	Oxygen tolerance	anaerobe
[Ref.: #60267]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.987

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43386]	2-butanol ChEBI	-	assimilation
[Ref.: #43386]	carbon dioxide ChEBI	-	growth
[Ref.: #43386]	casamino acids	-	growth
[Ref.: #43386]	casein	-	assimilation
[Ref.: #43386]	cellobiose ChEBI	+	growth
[Ref.: #43386]	cellulose ChEBI	-	growth
[Ref.: #43386]	dihydrogen ChEBI	-	growth
[Ref.: #43386]	ethanol ChEBI	-	assimilation
[Ref.: #43386]	fructose ChEBI	+	growth
[Ref.: #43386]	fucose ChEBI	-	growth
[Ref.: #43386]	fumarate ChEBI	-	growth
[Ref.: #43386]	galactose ChEBI	+	growth
[Ref.: #43386]	gelatin ChEBI	-	growth
[Ref.: #43386]	glucose ChEBI	+	growth
[Ref.: #43386]	lactose ChEBI	+	growth
[Ref.: #43386]	lactulose ChEBI	+	growth
[Ref.: #43386]	maltose ChEBI	+	growth
[Ref.: #43386]	maltotriose ChEBI	+	growth
[Ref.: #43386]	mannitol ChEBI	+	growth
[Ref.: #43386]	melibiose ChEBI	+	growth
[Ref.: #43386]	methanol ChEBI	-	assimilation
[Ref.: #43386]	myo-inositol ChEBI	+	growth
[Ref.: #43386]	nitrate ChEBI	-	electron acceptor
[Ref.: #43386]	oleate ChEBI	-	growth
[Ref.: #43386]	pectin ChEBI	-	growth
[Ref.: #43386]	peptone	-	assimilation
[Ref.: #43386]	propanol ChEBI	-	assimilation
[Ref.: #43386]	pyruvate ChEBI	-	growth
[Ref.: #43386]	raffinose ChEBI	-	growth
[Ref.: #43386]	rhamnose ChEBI	+	growth
[Ref.: #43386]	ribose ChEBI	+	growth
[Ref.: #43386]	starch ChEBI	-	growth
[Ref.: #43386]	sucrose ChEBI	+	growth
[Ref.: #43386]	sulfate ChEBI	-	electron acceptor
[Ref.: #43386]	tryptone	-	assimilation
[Ref.: #43386]	xylose ChEBI	+	growth
[Ref.: #43386]	yeast extract	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	90.91	20 of 22
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	non-pathway related	52.63	20 of 38
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	acetate fermentation	50	2 of 4
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	ppGpp biosynthesis	50	2 of 4
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	leucine metabolism	46.15	6 of 13
[Ref.: #66794]	isoprenoid biosynthesis	46.15	12 of 26
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	citric acid cycle	42.86	6 of 14
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	arginine metabolism	41.67	10 of 24
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5561]	Sample type/isolated from	fecal sample of healthy Dutch man
[Ref.: #5561]	Country	Netherlands
[Ref.: #5561]	Country ISO 3 Code	NLD
[Ref.: #5561]	Continent	Europe

[Ref.: #60267]	Sample type/isolated from	Human feces,25-yr-old healthy Dutch man
[Ref.: #60267]	Country	Netherlands
[Ref.: #60267]	Country ISO 3 Code	NLD
[Ref.: #60267]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5561]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5561]	Victivallis vadensis 16S ribosomal RNA gene, complete sequence	AY049713	1456	ENA	340101 tax ID
[Ref.: #20218]	Victivallis vadensis ATCC BAA-548 strain Cello 16S ribosomal RNA gene, partial sequence	JQ346729	1360	ENA	340101 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Victivallis vadensis DSM 14823	GCA_003096415	scaffold	GenBank	172901 tax ID	*
[Ref.: #66792]	Victivallis vadensis strain DSM 14823	172901.3	wgs	PATRIC	172901 tax ID	*
[Ref.: #66792]	Victivallis vadensis DSM 14823	2756170241	draft	JGI IMG/M	172901 tax ID	*

[Ref.: #5561]

GC-content

59.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Victivallis vadensis DSM 14823 NCBI: GCA_003096415.1
[Ref.: #69481]	spore-forming	no	79	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Victivallis vadensis DSM 14823 NCBI: GCA_003096415.1
[Ref.: #69480]	flagellated	no	97.251	yes
[Ref.: #69480]	gram-positive	no	96.532	yes
[Ref.: #69480]	anaerobic	yes	98.365	yes
[Ref.: #69480]	halophile	no	88.395	no
[Ref.: #69480]	spore-forming	no	94.883	no
[Ref.: #69480]	glucose-util	yes	82.153	no
[Ref.: #69480]	aerobic	no	95.636	no
[Ref.: #69480]	thermophile	no	98.254	no
[Ref.: #69480]	motile	no	89.734	yes
[Ref.: #69480]	glucose-ferment	no	53.807	no

Availability in culture collections External links

[Ref.: #5561]

Culture collection no.

DSM 14823, ATCC BAA-548, CCUG 54625

[Ref.: #86369]

SI-ID 101057

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces.	Zoetendal EG, Plugge CM, Akkermans ADL, de Vos WM	Int J Syst Evol Microbiol	10.1099/ijs.0.02362-0	2003	*

References

#5561

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14823

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43386

Erwin G. Zoetendal, Caroline M. Plugge, Antoon D. L. Akkermans, Willem M. de Vos: Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces. IJSEM 53: 211 - 215 2003 ( DOI 10.1099/ijs.0.02362-0 , PubMed 12656175 )

#60267 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54625

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86369

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID101057.1 )

* These data were automatically processed and therefore are not curated

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Victivallis vadensis DSM 14823

Victivallis vadensis DSM 14823

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