Victivallis vadensis Cello is an anaerobe, Gram-negative, coccus-shaped bacterium that was isolated from fecal sample of healthy Dutch man.
Gram-negative coccus-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Lentisphaerota |
| Class Lentisphaeria |
| Order Victivallales |
| Family Victivallaceae |
| Genus Victivallis |
| Species Victivallis vadensis |
| Full scientific name Victivallis vadensis Zoetendal et al. 2003 |
| BacDive ID | Other strains from Victivallis vadensis (1) | Type strain |
|---|---|---|
| 159431 | V. vadensis COR2-253-APC-1A, DSM 107450 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5561 | SYNTROPHOBACTER (MPOB) MEDIUM (DSMZ Medium 684) | Medium recipe at MediaDive | Name: SYNTROPHOBACTER (MPOB) MEDIUM (DSMZ Medium 684; with strain-specific modifications) Composition: Glucose 4.98504 g/l Na2CO3 0.997009 g/l Na2HPO4 x 2 H2O 0.528415 g/l Na2S x 9 H2O 0.498504 g/l KH2PO4 0.408774 g/l NH4Cl 0.299103 g/l NaCl 0.299103 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.109671 g/l MgCl2 x 6 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water | ||
| 43386 | Bicarbonate-buffered mineral salts medium with cellobiose |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 43386 | 35686 ChEBI | 2-butanol | - | assimilation | |
| 43386 | 16526 ChEBI | carbon dioxide | - | growth | |
| 43386 | casamino acids | - | growth | ||
| 43386 | casein | - | assimilation | ||
| 43386 | 17057 ChEBI | cellobiose | + | growth | |
| 43386 | 62968 ChEBI | cellulose | - | growth | |
| 43386 | 18276 ChEBI | dihydrogen | - | growth | |
| 43386 | 16236 ChEBI | ethanol | - | assimilation | |
| 43386 | 28757 ChEBI | fructose | + | growth | |
| 43386 | 33984 ChEBI | fucose | - | growth | |
| 43386 | 29806 ChEBI | fumarate | - | growth | |
| 43386 | 28260 ChEBI | galactose | + | growth | |
| 43386 | 5291 ChEBI | gelatin | - | growth | |
| 43386 | 17234 ChEBI | glucose | + | growth | |
| 43386 | 17716 ChEBI | lactose | + | growth | |
| 43386 | 6359 ChEBI | lactulose | + | growth | |
| 43386 | 17306 ChEBI | maltose | + | growth | |
| 43386 | 61993 ChEBI | maltotriose | + | growth | |
| 43386 | 29864 ChEBI | mannitol | + | growth | |
| 43386 | 28053 ChEBI | melibiose | + | growth | |
| 43386 | 17790 ChEBI | methanol | - | assimilation | |
| 43386 | 17268 ChEBI | myo-inositol | + | growth | |
| 43386 | 17632 ChEBI | nitrate | - | electron acceptor | |
| 43386 | 30823 ChEBI | oleate | - | growth | |
| 43386 | 17309 ChEBI | pectin | - | growth | |
| 43386 | peptone | - | assimilation | ||
| 43386 | 28831 ChEBI | propanol | - | assimilation | |
| 43386 | 15361 ChEBI | pyruvate | - | growth | |
| 43386 | 16634 ChEBI | raffinose | - | growth | |
| 43386 | 26546 ChEBI | rhamnose | + | growth | |
| 43386 | 33942 ChEBI | ribose | + | growth | |
| 43386 | 28017 ChEBI | starch | - | growth | |
| 43386 | 17992 ChEBI | sucrose | + | growth | |
| 43386 | 16189 ChEBI | sulfate | - | electron acceptor | |
| 43386 | tryptone | - | assimilation | ||
| 43386 | 18222 ChEBI | xylose | + | growth | |
| 43386 | yeast extract | - | growth |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | CMP-KDO biosynthesis | 100 | 4 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | kanosamine biosynthesis II | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | palmitate biosynthesis | 90.91 | 20 of 22 | ||
| 66794 | starch degradation | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | tetrahydrofolate metabolism | 85.71 | 12 of 14 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | NAD metabolism | 83.33 | 15 of 18 | ||
| 66794 | vitamin B12 metabolism | 82.35 | 28 of 34 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | vitamin B6 metabolism | 81.82 | 9 of 11 | ||
| 66794 | hydrogen production | 80 | 4 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | lipid A biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | vitamin B1 metabolism | 76.92 | 10 of 13 | ||
| 66794 | dTDPLrhamnose biosynthesis | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | glutamate and glutamine metabolism | 75 | 21 of 28 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | purine metabolism | 74.47 | 70 of 94 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | degradation of sugar acids | 72 | 18 of 25 | ||
| 66794 | degradation of pentoses | 71.43 | 20 of 28 | ||
| 66794 | photosynthesis | 71.43 | 10 of 14 | ||
| 66794 | pyrimidine metabolism | 71.11 | 32 of 45 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | alanine metabolism | 68.97 | 20 of 29 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | degradation of hexoses | 66.67 | 12 of 18 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | methylglyoxal degradation | 60 | 3 of 5 | ||
| 66794 | oxidative phosphorylation | 59.34 | 54 of 91 | ||
| 66794 | lipid metabolism | 58.06 | 18 of 31 | ||
| 66794 | reductive acetyl coenzyme A pathway | 57.14 | 4 of 7 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | lysine metabolism | 54.76 | 23 of 42 | ||
| 66794 | proline metabolism | 54.55 | 6 of 11 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | methionine metabolism | 53.85 | 14 of 26 | ||
| 66794 | non-pathway related | 52.63 | 20 of 38 | ||
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | tryptophan metabolism | 50 | 19 of 38 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | acetate fermentation | 50 | 2 of 4 | ||
| 66794 | heme metabolism | 50 | 7 of 14 | ||
| 66794 | dolichol and dolichyl phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | propionate fermentation | 50 | 5 of 10 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | ppGpp biosynthesis | 50 | 2 of 4 | ||
| 66794 | adipate degradation | 50 | 1 of 2 | ||
| 66794 | leucine metabolism | 46.15 | 6 of 13 | ||
| 66794 | isoprenoid biosynthesis | 46.15 | 12 of 26 | ||
| 66794 | metabolism of disaccharids | 45.45 | 5 of 11 | ||
| 66794 | cysteine metabolism | 44.44 | 8 of 18 | ||
| 66794 | citric acid cycle | 42.86 | 6 of 14 | ||
| 66794 | glutathione metabolism | 42.86 | 6 of 14 | ||
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | arginine metabolism | 41.67 | 10 of 24 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | factor 420 biosynthesis | 40 | 2 of 5 | ||
| 66794 | myo-inositol biosynthesis | 40 | 4 of 10 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | sulfate reduction | 38.46 | 5 of 13 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 33.33 | 4 of 12 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | molybdenum cofactor biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | androgen and estrogen metabolism | 31.25 | 5 of 16 | ||
| 66794 | polyamine pathway | 30.43 | 7 of 23 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | mevalonate metabolism | 28.57 | 2 of 7 | ||
| 66794 | arachidonic acid metabolism | 27.78 | 5 of 18 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | 3-phenylpropionate degradation | 26.67 | 4 of 15 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 23.08 | 3 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 23.08 | 3 of 13 | ||
| 66794 | nitrate assimilation | 22.22 | 2 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 83.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 67.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 90.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative aerobe | 74.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 93.82 | yes |
| 125438 | anaerobic | anaerobicⓘ | yes | 85.72 | no |
| 125438 | aerobic | aerobicⓘ | no | 91.17 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 83.51 | no |
| 125438 | thermophilic | thermophileⓘ | no | 91.29 | no |
| 125438 | flagellated | motile2+ⓘ | no | 80.00 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Neofunctionalization of S-adenosylmethionine decarboxylase into pyruvoyl-dependent L-ornithine and L-arginine decarboxylases is widespread in bacteria and archaea. | Li B, Liang J, Phillips MA, Michael AJ. | J Biol Chem | 10.1016/j.jbc.2023.105005 | 2023 | ||
| Metabolism | Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly. | Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S. | Appl Environ Microbiol | 10.1128/aem.01477-07 | 2007 | |
| Biochemical characterization of Fsa16295Glu from "Fervidibacter sacchari," the first hyperthermophilic GH50 with beta-1,3-endoglucanase activity and founding member of the subfamily GH50_3. | Covington JK, Torosian N, Cook AM, Palmer M, Bryan SG, Nou NO, Mewalal R, Harmon-Smith M, Blaby IK, Cheng JF, Hess M, Brumm PJ, Singh NK, Venkateswaran K, Hedlund BP. | Front Microbiol | 10.3389/fmicb.2024.1355444 | 2024 | ||
| Enzymology | Identification and characterization of a novel beta-galactosidase from Victivallis vadensis ATCC BAA-548, an anaerobic fecal bacterium. | Temuujin U, Chi WJ, Park JS, Chang YK, Song JY, Hong SK. | J Microbiol | 10.1007/s12275-012-2478-6 | 2012 | |
| Transcriptome | Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space. | Helbert W, Poulet L, Drouillard S, Mathieu S, Loiodice M, Couturier M, Lombard V, Terrapon N, Turchetto J, Vincentelli R, Henrissat B. | Proc Natl Acad Sci U S A | 10.1073/pnas.1815791116 | 2019 | |
| Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract. | van Passel MW, Kant R, Palva A, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Davenport KW, Sims D, Brettin TS, Detter JC, Han S, Larimer FW, Land ML, Hauser L, Kyrpides N, Ovchinnikova G, Richardson PP, de Vos WM, Smidt H, Zoetendal EG. | J Bacteriol | 10.1128/jb.00271-11 | 2011 | ||
| Gut Microbiome-Wide Search for Bacterial Azoreductases Reveals Potentially Uncharacterized Azoreductases Encoded in the Human Gut Microbiome. | Braccia DJ, Minabou Ndjite G, Weiss A, Levy S, Abeysinghe S, Jiang X, Pop M, Hall B. | Drug Metab Dispos | 10.1124/dmd.122.000898 | 2023 | ||
| Extensive microbial and functional diversity within the chicken cecal microbiome. | Sergeant MJ, Constantinidou C, Cogan TA, Bedford MR, Penn CW, Pallen MJ. | PLoS One | 10.1371/journal.pone.0091941 | 2014 | ||
| Microbial community structure in a biogas digester utilizing the marine energy crop Saccharina latissima. | Pope PB, Vivekanand V, Eijsink VG, Horn SJ. | 3 Biotech | 10.1007/s13205-012-0097-x | 2013 | ||
| Utilization of glycosaminoglycans by the human gut microbiota: participating bacteria and their enzymatic machineries. | Rawat PS, Seyed Hameed AS, Meng X, Liu W. | Gut Microbes | 10.1080/19490976.2022.2068367 | 2022 | ||
| Metabolism | Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification. | Haft DH, Basu MK. | J Bacteriol | 10.1128/jb.00040-11 | 2011 | |
| Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup. | Shen PS, Domek MJ, Sanz-Garcia E, Makaju A, Taylor RM, Hoggan R, Culumber MD, Oberg CJ, Breakwell DP, Prince JT, Belnap DM. | J Virol | 10.1128/jvi.00407-12 | 2012 | ||
| Metabolism | Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor family. | Haft DH, Basu MK, Mitchell DA. | BMC Biol | 10.1186/1741-7007-8-70 | 2010 | |
| Metabolism | Biochemical Characteristics and Substrate Degradation Pattern of a Novel Exo-Type beta-Agarase from the Polysaccharide-Degrading Marine Bacterium Flammeovirga sp. Strain MY04. | Han W, Cheng Y, Wang D, Wang S, Liu H, Gu J, Wu Z, Li F. | Appl Environ Microbiol | 10.1128/aem.00393-16 | 2016 | |
| Genetics | Analysis of genome content evolution in pvc bacterial super-phylum: assessment of candidate genes associated with cellular organization and lifestyle. | Kamneva OK, Knight SJ, Liberles DA, Ward NL. | Genome Biol Evol | 10.1093/gbe/evs113 | 2012 | |
| Genetics | Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics. | Noel CJ, Diaz N, Sicheritz-Ponten T, Safarikova L, Tachezy J, Tang P, Fiori PL, Hirt RP. | BMC Genomics | 10.1186/1471-2164-11-99 | 2010 | |
| Enzymology | Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. | Hou S, Makarova KS, Saw JH, Senin P, Ly BV, Zhou Z, Ren Y, Wang J, Galperin MY, Omelchenko MV, Wolf YI, Yutin N, Koonin EV, Stott MB, Mountain BW, Crowe MA, Smirnova AV, Dunfield PF, Feng L, Wang L, Alam M. | Biol Direct | 10.1186/1745-6150-3-26 | 2008 | |
| Phylogeny | Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces. | Zoetendal EG, Plugge CM, Akkermans ADL, de Vos WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.02362-0 | 2003 |
| #5561 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14823 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #43386 | Erwin G. Zoetendal, Caroline M. Plugge, Antoon D. L. Akkermans, Willem M. de Vos: Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces. IJSEM 53: 211 - 215 2003 ( DOI 10.1099/ijs.0.02362-0 , PubMed 12656175 ) |
| #60267 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54625 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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