Vibrio atlanticus (DSM 26479, CECT 7223, LMG 24300)

Name: Vibrio atlanticus (DSM 26479, CECT 7223, LMG 24300)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17361

Type strain

Strain Designation Vb 11.11

Culture col. no. DSM 26479 CECT 7223 LMG 24300 Vb 11.11

NCBI tax ID(s) 693153

Special Collections DSMZ

History DSMZ <- CECT <- J. L. Romalde, University of Santiago de Compostela, Spain <- R. Beaz

Links

Vibrio atlanticus Vb 11.11 is a bacterium that was isolated from cultured clams Ruditapes philippinarum.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 307625

CAIM 1847,LMG 23856,LMG 24300,CECT 7223,DSM 26479

@ref 20215

Last LPSN update 2026-05-29 08:28:59

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio atlanticus

Full scientific name Vibrio atlanticus Diéguez et al. 2011

BacDive ID	Other strains from **Vibrio atlanticus** (1)	Type strain
137566	V. atlanticus CIP 107716

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.628
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18240	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18240	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.589

Spore formation

@ref	Spore formation	Confidence
125438		92.271
125439		97.74

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
18240	cultured clams Ruditapes philippinarum	Ruditapes philippinarum	Galicia, Vilaboa	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence EF599163 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	6823
Soil Samples	235
Animal Samples	1389
Plant Samples	46
Total Samples	8493

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434731v1 assembly for Vibrio atlanticus CECT 7223	complete	GCA_024347315	693153.25	8114665696	693153	99.12
66792	VatlanticusCECT7223_Velvet_Prokka assembly for Vibrio atlanticus CECT 7223	scaffold	GCA_900089855	693153.4	2767802215	693153	58.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18240	Vibrio atlanticus strain LMG 24300 16S ribosomal RNA gene, partial sequence	EF599163	1536		693153

GC content

18240

GC-content (mol%)44.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2434731v1 assembly for Vibrio atlanticus CECT 7223
NCBI: GCA_024347315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.59	no
125439	gram_stain	BacteriaNetⓘ	negative	93.63	no
125439	spore_formation	BacteriaNetⓘ	no	97.74	no
125439	motility	BacteriaNetⓘ	yes	65.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio atlanticus CECT 7223
NCBI: GCA_024347315.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.60	no
125438	aerobic	aerobicⓘ	no	69.69	no
125438	spore-forming	spore-formingⓘ	no	92.27	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	87.22	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Combined cellular and proteomics approach suggests differential processing of a native and a foreign vibrio in the sponge Halicondria panicea.	Marulanda-Gomez AM, Mueller B, Bayer K, Abukhalaf M, Cassidy L, Tholey A, Fraune S, Pita L, Hentschel U.	mBio	10.1128/mbio.01474-25	2025
Phylogeny	Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov., isolated from the clams Ruditapes philippinarum and Ruditapes decussatus.	Dieguez AL, Beaz-Hidalgo R, Cleenwerck I, Balboa S, de Vos P, Romalde JL	Int J Syst Evol Microbiol	10.1099/ijs.0.025320-0	2010

References

#18240	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26479
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Vibrio atlanticus (DSM 26479, CECT 7223, LMG 24300)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024347315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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