Vibrio artabrorum (DSM 26480, CECT 7226, LMG 23865)

Name: Vibrio artabrorum (DSM 26480, CECT 7226, LMG 23865)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17360

Type strain

Strain Designation Vb 11.8

Culture col. no. DSM 26480 CECT 7226 LMG 23865 Vb 11.8

NCBI tax ID(s) 446374

Special Collections DSMZ

History <- CECT <- J. L. Romalde, Univ. Santiago de Compostela, Spain <- R. Beaz

Links

Vibrio artabrorum Vb 11.8 is a bacterium that was isolated from cultured clams Ruditapes philippinarum.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 307626

CAIM 1845,LMG 23865,CECT 7226,DSM 26480

@ref 20215

Last LPSN update 2026-02-09 11:22:12

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio artabrorum

Full scientific name Vibrio artabrorum Diéguez et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18241	MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)		Medium recipe at MediaDive	Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18241	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.1

Spore formation

@ref	Spore formation	Confidence
125439		95.3
125438		92.053

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
18241	cultured clams Ruditapes philippinarum	Ruditapes philippinarum	Galicia, Vilaboa	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence EF599164 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	5115
Soil Samples	160
Animal Samples	960
Plant Samples	30
Total Samples	6265

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434729v1 assembly for Vibrio artabrorum CECT 7226	complete	GCA_024347295	446374.5	8053448042	446374	98.46
124043	ASM3040999v1 assembly for Vibrio artabrorum CECT 7226	contig	GCA_030409995	446374.6	8114670391	446374	63.21
124043	ASM4243054v1 assembly for Vibrio artabrorum CECT 7226	scaffold	GCA_042430545			446374	56.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18241	Vibrio artabrorum strain LMG 23865 16S ribosomal RNA gene, partial sequence	EF599164	1544		446374
124043	Vibrio artabrorum strain CECT 7226 16S ribosomal RNA gene, partial sequence.	MT760266	1372		446374

GC content

18241

GC-content (mol%)44.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio artabrorum CECT 7226
NCBI: GCA_024347295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.30	no
125439	motility	BacteriaNetⓘ	yes	76.60	no
125439	gram_stain	BacteriaNetⓘ	negative	97.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio artabrorum CECT 7226
NCBI: GCA_024347295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.51	no
125438	aerobic	aerobicⓘ	no	70.05	no
125438	spore-forming	spore-formingⓘ	no	92.05	no
125438	thermophilic	thermophileⓘ	no	97.96	yes
125438	flagellated	motile2+ⓘ	yes	86.13	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov., isolated from the clams Ruditapes philippinarum and Ruditapes decussatus.	Dieguez AL, Beaz-Hidalgo R, Cleenwerck I, Balboa S, de Vos P, Romalde JL	Int J Syst Evol Microbiol	10.1099/ijs.0.025320-0	2010

References

#18241	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26480
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio artabrorum (DSM 26480, CECT 7226, LMG 23865)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024347295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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