Name: Vibrio artabrorum Vb 11.8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17360

Type strain:

Species: Vibrio artabrorum

Strain Designation: Vb 11.8

Culture col. no.: DSM 26480, CECT 7226, LMG 23865

Strain history: <- CECT <- J. L. Romalde, Univ. Santiago de Compostela, Spain <- R. Beaz

NCBI tax ID(s): 446374 (species)

SI-ID 307626

LMG 23865, CECT 7226, DSM 26480

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Vibrio artabrorum Vb 11.8 is a mesophilic bacterium that was isolated from cultured clams Ruditapes philippinarum.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio artabrorum**
	Full Scientific Name (LPSN)	Vibrio artabrorum Diéguez et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %97
[Ref.: #125438]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18241]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #18241]

Culture medium growth

[Ref.: #18241]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18241]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18241]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %96.1

[Ref.: #125439]	Ability of spore formation	no Confidence in %95.3
[Ref.: #125438]	Ability of spore formation	no Confidence in %92.053

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18241]	Sample type/isolated from	cultured clams Ruditapes philippinarum
[Ref.: #18241]	Host species	Ruditapes philippinarum
[Ref.: #18241]	Geographic location (country and/or sea, region)	Galicia, Vilaboa
[Ref.: #18241]	Country	Spain
[Ref.: #18241]	Country ISO 3 Code	ESP
[Ref.: #18241]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Host	#Invertebrates (Other)	#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF599164 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	5115
Soil Samples	160
Animal Samples	960
Plant Samples	30
Total Samples	6265

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18241]	Vibrio artabrorum strain LMG 23865 16S ribosomal RNA gene, partial sequence	EF599164	1544	GenBank ENA	446374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio artabrorum CECT 7226	GCA_024347295	complete	GenBank ENA	446374 tax ID	*

[Ref.: #18241]

GC-content

44.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio artabrorum CECT 7226 NCBI: GCA_024347295.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.514	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	70.05	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.053	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.955	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	86.133	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio artabrorum CECT 7226 NCBI: GCA_024347295
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	76.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.1

Availability in culture collections External links

[Ref.: #18241]

Culture collection no.

DSM 26480, CECT 7226, LMG 23865

[Ref.: #86361]

SI-ID 307626

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov., isolated from the clams Ruditapes philippinarum and Ruditapes decussatus.	Dieguez AL, Beaz-Hidalgo R, Cleenwerck I, Balboa S, de Vos P, Romalde JL	Int J Syst Evol Microbiol	10.1099/ijs.0.025320-0	2010	*

References

#18241

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26480

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86361

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307626.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Vibrio artabrorum CECT 7226

Vibrio artabrorum CECT 7226

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