Name: Bifidobacterium thermacidophilum 36
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1735

Type strain:

Species: Bifidobacterium thermacidophilum

Strain Designation: 36

Culture col. no.: DSM 15837, CGMCC AS 1.2282, JCM 11165, CGMCC 1.2282, KCTC 5850, LMG 21395, NBRC 106100, VTT E-052869

Strain history: X. Dong 36.

NCBI tax ID(s): 246618 (species), 79262 (subspecies)

SI-ID 14991

LMG 21395, AS 1.2282, ATCC 55326, JCM 11165, DSM 15837, CGMCC 1.2282, VTT E-052869

Special Collections

Section

Bifidobacterium thermacidophilum 36 is an anaerobe, mesophilic bacterium that was isolated from waste water of a bean-curd farm.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium thermacidophilum**
	Full Scientific Name (LPSN)	Bifidobacterium thermacidophilum Dong et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6050]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #6050]

Culture medium growth

[Ref.: #6050]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6050]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6050]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6050]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.276
[Ref.: #69481]	Ability of spore formation	no Confidence in %96

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6050]	Sample type/isolated from	waste water of a bean-curd farm
[Ref.: #6050]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #6050]	Country	China
[Ref.: #6050]	Country ISO 3 Code	CHN
[Ref.: #6050]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Wastewater of a bean-curd farm
[Ref.: #67770]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6050]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium thermacidophilum subsp. thermacidophilum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11165	LC311741	1467	GenBank ENA	79262 tax ID
[Ref.: #6050]	Bifidobacterium thermophilum 16S rRNA gene, complete sequence	AB016246	1533	GenBank ENA	33905 tax ID
[Ref.: #67770]	Bifidobacterium thermacidophilum subsp. thermacidophilum gene for 16S ribosomal RNA, partial sequence	AB437362	1512	GenBank ENA	79262 tax ID
[Ref.: #20218]	Bifidobacterium thermacidophilum gene for 16S rRNA, partial sequence, strain: JCM 11165	AB507157	660	GenBank ENA	246618 tax ID	*
[Ref.: #20218]	Bifidobacterium thermacidophilum subsp. thermacidophilum strain DSM 15837 16S ribosomal RNA gene, partial sequence	GQ487647	139	GenBank ENA	79262 tax ID	*
[Ref.: #20218]	Bifidobacterium thermacidophilum subsp. thermacidophilum strain JCM 11165 16S ribosomal RNA gene, partial sequence	GQ227716	308	GenBank ENA	79262 tax ID	*
[Ref.: #124043]	Bifidobacterium thermacidophilum subsp. thermacidophilum gene for 16S rRNA, partial sequence, strain: NBRC 106100.	AB682359	1456	GenBank ENA	79262 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837	GCA_000771005	contig	GenBank ENA	1121111 tax ID
[Ref.: #67770]	Bifidobacterium thermacidophilum subsp. thermacidophilum LMG 21395	GCA_000741455	contig	GenBank ENA	79262 tax ID
[Ref.: #67770]	Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837	GCA_000426425	contig	GenBank ENA	1121111 tax ID
[Ref.: #66792]	Bifidobacterium thermacidophilum subsp. thermacidophilum strain LMG 21395	79262.3	wgs	PATRIC	79262 tax ID	*
[Ref.: #66792]	Bifidobacterium thermacidophilum thermacidophilum DSM 15837	2524614678	draft	JGI IMG/M	1121111 tax ID	*
[Ref.: #66792]	Bifidobacterium thermacidophilum thermacidophilum DSM 15837	2675903354	draft	JGI IMG/M	1121111 tax ID	*

[Ref.: #6050]	GC-content	56.7 mol%
[Ref.: #67770]	GC-content	57.7 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium thermacidophilum subsp. thermacidophilum strain LMG 21395 PATRIC: 79262.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 PATRIC: 1121111.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.858	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.131	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.276	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.582	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.487	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #6050]

Culture collection no.

DSM 15837, CGMCC AS 1.2282, JCM 11165, CGMCC 1.2282, KCTC 5850, LMG 21395, NBRC 106100, VTT E-052869

[Ref.: #71382]

SI-ID 14991

References

#6050

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15837

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71382

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14991.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Bifidobacterium thermacidophilum subsp. thermacidophilum strain LMG 21395

Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837

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