Vibrio fortis (DSM 19133, CAIM 629, CIP 108196)

Name: Vibrio fortis (DSM 19133, CAIM 629, CIP 108196)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17337

Type strain

Culture col. no. DSM 19133 CAIM 629 CIP 108196 LMG 21557 CCUG 56780

NCBI tax ID(s) 212667

Special Collections DSMZ CCUG CIP

History <- CAIM <- F. L. Thompson CIP <- 2003, B. Gomez-Gil, CAIM <- 2002, F.L. Thompson, UGent - Fac. Wetenschappen - Vakgroep Biochemie en Microbiologie, Lab. Microbiol.<- J.Vandenberghe Univ. Ghent Belgium (Vibrio sp.) <- 1996 National Center for Marine and Aquaculture Research, Ecuador

Links

Vibrio fortis DSM 19133 is an aerobe, Gram-negative, motile animal pathogen that was isolated from shrimp larvae.

Gram-negative motile rod-shaped aerobe animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100124

CAIM:629,LMG 21557,DSM 19133,CIP 108196,CCUG 58098,CECT 8657,CCUG 56780T

@ref 20215

Last LPSN update 2026-02-09 11:22:11

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio fortis

Full scientific name Vibrio fortis Thompson et al. 2003

BacDive ID	Other strains from **Vibrio fortis** (1)	Type strain
131142	V. fortis AN60, DSM 26067, JCM 18510

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		98.5
125438	negative		99.8
119435	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7931	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33910	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119435	CIP Medium 72	Medium recipe at CIP
119435	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7931	positive	growth	28
33910	positive	growth	30
61089	positive	growth	30-37
119435	positive	growth	15-30
119435	negative	growth	5
119435	negative	growth	37
119435	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
61089	aerobe
119435	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.9
125438		90.401
119435

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119435	NaCl	positive	growth	2-10 %
119435	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
119435	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
119435	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
119435	17234 ChEBI	glucose	-	fermentation
119435	17234 ChEBI	glucose	+	degradation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
119435	17716 ChEBI	lactose	-	fermentation
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
119435	17632 ChEBI	nitrate	+	reduction
119435	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
119435	16301 ChEBI	nitrite	-	reduction
119435	132112 ChEBI	sodium thiosulfate	-	builds gas from
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119435	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
119435	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
119435	15688 ChEBI	acetoin		+
119435	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	+			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119435	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119435	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
119435	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119435	caseinase	+	3.4.21.50
119435	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119435	gamma-glutamyltransferase	+	2.3.2.2
119435	gelatinase	+/-
68369	gelatinase	+		from API 20NE
119435	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119435	lipase	+
68382	lipase (C 14)	-		from API zym
119435	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119435	ornithine decarboxylase	-	4.1.1.17
119435	oxidase	+
119435	phenylalanine ammonia-lyase	+	4.3.1.24
119435	protease	+
68382	trypsin	+	3.4.21.4	from API zym
119435	tryptophan deaminase	-
119435	tween esterase	+
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119435	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7931	+	+	+	-	-	+	+	+	+	-	+	-	+	+	+	+	-	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119435	not determinedn.d.	+	-	+	+	+	-	-	+	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	+	-	+	-	-	-	-	-	-	-	+	-	-	+	-	-	+	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date	Isolation date
7931	shrimp (Litopenaeus vannamei) larvae	Litopenaeus vannamei	Ecuador	ECU	Middle and South America
61089	Shrimp larvae (Litopenaeus vannamei)		Ecuador	ECU	Middle and South America	1996
119435	Animal, Shrimp larvae, Litopenaeus vannamei		Ecuador	ECU	Middle and South America		1996

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
7931		1	Risk group (German classification) According to TRBA 466
119435		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434747v1 assembly for Vibrio fortis LMG 21557	complete	GCA_024347475	212667.26	8113045496	212667	99.04

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7931	Vibrio fortis partial 16S rRNA gene, type strain LMG 21557T	AJ514916	1505	212667
124043	Vibrio fortis strain LMG 21557 16S ribosomal RNA gene, partial sequence.	OQ147500	1024	212667
124043	Vibrio fortis strain CAIM 629 16S ribosomal RNA gene, partial sequence.	MT757991	1398	212667
124043	Vibrio fortis strain CAIM 629 16S ribosomal RNA gene, partial sequence.	MT759945	1389	212667

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio fortis LMG 21557
NCBI: GCA_024347475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	yes	70.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio fortis LMG 21557
NCBI: GCA_024347475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.80	no
125438	anaerobic	anaerobicⓘ	no	94.63	yes
125438	aerobic	aerobicⓘ	no	60.43	no
125438	spore-forming	spore-formingⓘ	no	90.40	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	86.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics.	Kim HJ, Ryu JO, Lee SY, Kim ES, Kim HY.	BMC Microbiol	10.1186/s12866-015-0577-3	2015
	An improved detection and quantification method for the coral pathogen Vibrio coralliilyticus.	Wilson B, Muirhead A, Bazanella M, Huete-Stauffer C, Vezzulli L, Bourne DG.	PLoS One	10.1371/journal.pone.0081800	2013
Enzymology	Detection and quantification of the coral pathogen Vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes.	Pollock FJ, Morris PJ, Willis BL, Bourne DG.	Appl Environ Microbiol	10.1128/aem.00330-10	2010
Transcriptome	Characterization of multidrug resistance in Vibrio species isolated from marine invertebrates from Andaman Sea.	Kumari P, Poddar A, Das SK.	3 Biotech	10.1007/s13205-020-02445-5	2020
Biotechnology	Prevalence of Bacterial Coinfections with Vibrio harveyi in the Industrialized Flow-through Aquaculture Systems in Hainan Province: A Neglected High-Risk Lethal Causative Agent to Hybrid Grouper.	Xu H, Zeng YH, Yin WL, Lu HB, Gong XX, Zhang N, Zhang X, Long H, Ren W, Cai XN, Huang AY, Xie ZY.	Int J Mol Sci	10.3390/ijms231911628	2022
	Characterization of bacteria in ballast water using MALDI-TOF mass spectrometry.	Emami K, Askari V, Ullrich M, Mohinudeen K, Anil AC, Khandeparker L, Burgess JG, Mesbahi E.	PLoS One	10.1371/journal.pone.0038515	2012
Phylogeny	Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment.	Thompson FL, Thompson CC, Hoste B, Vandemeulebroecke K, Gullian M, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02658-0	2003

References

#7931	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19133
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33910	; Curators of the CIP;
#61089	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56780
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#119435	Collection of Institut Pasteur ; Curators of the CIP; CIP 108196
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio fortis (DSM 19133, CAIM 629, CIP 108196)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024347475

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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